Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 16 studies | 62% ± 21% | |
endothelial cell | 16 studies | 33% ± 16% | |
astrocyte | 13 studies | 36% ± 15% | |
oligodendrocyte precursor cell | 13 studies | 50% ± 19% | |
type I pneumocyte | 8 studies | 40% ± 11% | |
GABAergic neuron | 8 studies | 35% ± 16% | |
ciliated cell | 8 studies | 33% ± 16% | |
type II pneumocyte | 7 studies | 36% ± 12% | |
epithelial cell | 6 studies | 28% ± 9% | |
fibroblast | 6 studies | 26% ± 9% | |
glutamatergic neuron | 5 studies | 41% ± 15% | |
interneuron | 5 studies | 38% ± 20% | |
club cell | 5 studies | 39% ± 13% | |
cardiac muscle cell | 4 studies | 19% ± 2% | |
luminal cell of prostate epithelium | 4 studies | 20% ± 3% | |
glial cell | 3 studies | 26% ± 11% | |
granule cell | 3 studies | 19% ± 3% | |
microglial cell | 3 studies | 25% ± 1% | |
neuron | 3 studies | 42% ± 24% | |
mesothelial cell | 3 studies | 16% ± 1% | |
ependymal cell | 3 studies | 56% ± 13% | |
respiratory goblet cell | 3 studies | 41% ± 14% | |
basal cell | 3 studies | 22% ± 5% | |
goblet cell | 3 studies | 50% ± 26% | |
mucus secreting cell | 3 studies | 36% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5771.11 | 2640 / 2642 | 99% | 41.61 | 698 / 705 |
prostate | 100% | 4282.62 | 245 / 245 | 99% | 27.37 | 496 / 502 |
intestine | 99% | 3452.70 | 960 / 966 | 98% | 18.84 | 514 / 527 |
thymus | 100% | 10412.38 | 653 / 653 | 96% | 29.99 | 581 / 605 |
ovary | 97% | 2198.11 | 175 / 180 | 98% | 17.22 | 423 / 430 |
esophagus | 98% | 3449.28 | 1413 / 1445 | 97% | 17.87 | 177 / 183 |
lung | 99% | 3527.37 | 570 / 578 | 94% | 13.71 | 1091 / 1155 |
stomach | 96% | 3067.69 | 346 / 359 | 96% | 18.87 | 275 / 286 |
breast | 88% | 2474.75 | 402 / 459 | 96% | 14.70 | 1068 / 1118 |
uterus | 98% | 2361.39 | 167 / 170 | 78% | 8.87 | 358 / 459 |
bladder | 100% | 3257.81 | 21 / 21 | 75% | 9.06 | 376 / 504 |
skin | 80% | 3028.39 | 1450 / 1809 | 94% | 15.54 | 445 / 472 |
pancreas | 79% | 1772.78 | 258 / 328 | 91% | 11.36 | 162 / 178 |
kidney | 47% | 698.60 | 42 / 89 | 60% | 4.33 | 539 / 901 |
muscle | 100% | 20240.84 | 803 / 803 | 0% | 0 | 0 / 0 |
heart | 92% | 2768.69 | 788 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 9.24 | 73 / 80 |
blood vessel | 88% | 1775.86 | 1175 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 80% | 9.09 | 36 / 45 |
adipose | 74% | 1134.40 | 893 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 47% | 557.54 | 122 / 258 | 25% | 1.35 | 57 / 230 |
liver | 0% | 10.10 | 1 / 226 | 16% | 1.12 | 64 / 406 |
spleen | 9% | 92.09 | 21 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 5% | 55.32 | 45 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0005515 | Molecular function | protein binding |
GO_0004843 | Molecular function | cysteine-type deubiquitinase activity |
Gene name | USP54 |
Protein name | Ubiquitin specific peptidase 54 Inactive ubiquitin carboxyl-terminal hydrolase 54 (Inactive ubiquitin-specific peptidase 54) |
Synonyms | hCG_1730077 C10orf29 |
Description | FUNCTION: Has no peptidase activity. |
Accessions | H7C296 ENST00000339859.8 [Q70EL1-1] X6RH50 A0A7P0T9N2 H7C1E9 ENST00000422491.7 ENST00000680396.1 ENST00000693251.1 A0A8I5KNN9 ENST00000418501.5 ENST00000689425.1 ENST00000466048.6 ENST00000687698.1 [Q70EL1-1] ENST00000424265.5 ENST00000433394.1 ENST00000681793.1 R4GN32 A0A7P0T9K1 A0A8I5KRV2 Q70EL1 A0A8I5KTP4 A0A804D9U3 A0A8I5KYV7 ENST00000687418.1 ENST00000451492.5 X6RGF2 ENST00000691043.1 X6RHN7 ENST00000413442.5 ENST00000685297.1 A0A8I5KYW2 |