Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 10 studies | 55% ± 25% | |
goblet cell | 10 studies | 54% ± 23% | |
enterocyte | 8 studies | 75% ± 19% | |
fibroblast | 7 studies | 30% ± 7% | |
respiratory goblet cell | 6 studies | 39% ± 25% | |
kidney loop of Henle epithelial cell | 6 studies | 31% ± 11% | |
intestinal crypt stem cell | 6 studies | 69% ± 30% | |
progenitor cell | 5 studies | 86% ± 16% | |
club cell | 4 studies | 34% ± 10% | |
secretory cell | 4 studies | 26% ± 9% | |
transit amplifying cell | 4 studies | 82% ± 15% | |
mucus secreting cell | 4 studies | 69% ± 21% | |
myofibroblast cell | 4 studies | 51% ± 20% | |
luminal cell of prostate epithelium | 4 studies | 47% ± 22% | |
renal beta-intercalated cell | 3 studies | 69% ± 33% | |
enteroendocrine cell | 3 studies | 47% ± 25% | |
adventitial cell | 3 studies | 24% ± 11% | |
duct epithelial cell | 3 studies | 27% ± 11% | |
pericyte | 3 studies | 17% ± 1% | |
pancreatic ductal cell | 3 studies | 58% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 9 studies | 38% ± 23% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 96% | 2942.85 | 234 / 245 | 88% | 185.42 | 442 / 502 |
stomach | 88% | 9297.19 | 315 / 359 | 95% | 665.86 | 272 / 286 |
pancreas | 96% | 1112.24 | 316 / 328 | 85% | 503.46 | 151 / 178 |
intestine | 67% | 17391.16 | 644 / 966 | 97% | 875.54 | 511 / 527 |
lung | 91% | 1250.05 | 527 / 578 | 33% | 127.46 | 385 / 1155 |
liver | 56% | 416.18 | 126 / 226 | 55% | 110.72 | 224 / 406 |
ureter | 0% | 0 | 0 / 0 | 100% | 62.40 | 1 / 1 |
ovary | 94% | 1892.46 | 169 / 180 | 2% | 1.75 | 10 / 430 |
muscle | 93% | 1982.40 | 745 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 87% | 1808.62 | 1164 / 1335 | 0% | 0 | 0 / 0 |
kidney | 81% | 1184.64 | 72 / 89 | 3% | 4.58 | 29 / 901 |
bladder | 38% | 494.33 | 8 / 21 | 29% | 223.07 | 146 / 504 |
esophagus | 10% | 86.56 | 147 / 1445 | 46% | 306.48 | 85 / 183 |
adipose | 55% | 404.98 | 663 / 1204 | 0% | 0 | 0 / 0 |
skin | 49% | 395.71 | 888 / 1809 | 1% | 4.13 | 5 / 472 |
thymus | 49% | 300.54 | 317 / 653 | 0% | 0.22 | 1 / 605 |
breast | 42% | 366.93 | 191 / 459 | 4% | 8.52 | 41 / 1118 |
adrenal gland | 23% | 129.86 | 60 / 258 | 6% | 15.99 | 13 / 230 |
uterus | 15% | 86.31 | 26 / 170 | 13% | 34.90 | 58 / 459 |
brain | 13% | 188.51 | 340 / 2642 | 0% | 0.09 | 1 / 705 |
heart | 13% | 60.73 | 112 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 1.26 | 2 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
GO_0030195 | Biological process | negative regulation of blood coagulation |
GO_0010468 | Biological process | regulation of gene expression |
GO_0007283 | Biological process | spermatogenesis |
GO_0009986 | Cellular component | cell surface |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
GO_0005178 | Molecular function | integrin binding |
Gene name | TSPAN8 |
Protein name | Tetraspanin-8 (Tspan-8) (Transmembrane 4 superfamily member 3) (Tumor-associated antigen CO-029) |
Synonyms | TM4SF3 |
Description | |
Accessions | ENST00000546561.2 P19075 ENST00000247829.8 ENST00000393330.6 |