Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 21 studies | 74% ± 21% | |
epithelial cell | 17 studies | 48% ± 22% | |
basal cell | 14 studies | 37% ± 12% | |
goblet cell | 12 studies | 43% ± 18% | |
secretory cell | 8 studies | 61% ± 15% | |
club cell | 7 studies | 59% ± 20% | |
respiratory goblet cell | 7 studies | 72% ± 24% | |
epithelial cell of proximal tubule | 5 studies | 36% ± 6% | |
enterocyte | 5 studies | 50% ± 26% | |
deuterosomal cell | 4 studies | 70% ± 6% | |
duct epithelial cell | 4 studies | 42% ± 19% | |
mucus secreting cell | 4 studies | 57% ± 22% | |
transit amplifying cell | 4 studies | 23% ± 4% | |
luminal cell of prostate epithelium | 4 studies | 37% ± 12% | |
hillock cell | 3 studies | 33% ± 13% | |
squamous epithelial cell | 3 studies | 66% ± 17% | |
kidney loop of Henle epithelial cell | 3 studies | 39% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 96% | 10059.37 | 236 / 245 | 99% | 1547.74 | 499 / 502 |
kidney | 100% | 18880.91 | 89 / 89 | 73% | 362.83 | 654 / 901 |
thymus | 100% | 6263.07 | 653 / 653 | 70% | 248.77 | 423 / 605 |
stomach | 78% | 5511.93 | 280 / 359 | 80% | 250.45 | 228 / 286 |
intestine | 57% | 14329.53 | 547 / 966 | 88% | 412.01 | 464 / 527 |
lung | 75% | 2656.61 | 434 / 578 | 52% | 143.43 | 600 / 1155 |
bladder | 62% | 4557.62 | 13 / 21 | 61% | 207.39 | 305 / 504 |
ureter | 0% | 0 | 0 / 0 | 100% | 94.04 | 1 / 1 |
pancreas | 10% | 64.80 | 34 / 328 | 85% | 415.21 | 152 / 178 |
breast | 34% | 331.23 | 157 / 459 | 53% | 149.32 | 593 / 1118 |
uterus | 12% | 326.15 | 20 / 170 | 53% | 204.17 | 241 / 459 |
adrenal gland | 55% | 427.86 | 142 / 258 | 0% | 0.47 | 1 / 230 |
esophagus | 10% | 139.02 | 142 / 1445 | 43% | 119.55 | 79 / 183 |
tonsil | 0% | 0 | 0 / 0 | 40% | 76.03 | 18 / 45 |
ovary | 2% | 9.69 | 3 / 180 | 34% | 65.23 | 148 / 430 |
liver | 19% | 95.86 | 42 / 226 | 1% | 3.63 | 5 / 406 |
brain | 15% | 100.42 | 406 / 2642 | 0% | 0 | 0 / 705 |
skin | 11% | 55.14 | 190 / 1809 | 0% | 0.16 | 1 / 472 |
adipose | 6% | 37.67 | 76 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 2% | 13.83 | 28 / 1335 | 0% | 0 | 0 / 0 |
muscle | 0% | 2.59 | 4 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 39.20 | 3 / 929 | 0% | 0 | 0 / 0 |
heart | 0% | 1.54 | 2 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
GO_0050821 | Biological process | protein stabilization |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0030054 | Cellular component | cell junction |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0031982 | Cellular component | vesicle |
GO_0005886 | Cellular component | plasma membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | TSPAN1 |
Protein name | Tetraspanin-1 (Tspan-1) (Tetraspan NET-1) (Tetraspanin TM4-C) |
Synonyms | |
Description | |
Accessions | ENST00000372003.6 O60635 |