Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 5 studies | 30% ± 8% | |
dendritic cell | 3 studies | 18% ± 3% | |
intestinal crypt stem cell | 3 studies | 17% ± 1% |
Insufficient scRNA-seq data for expression of TRUB2 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2370.84 | 2642 / 2642 | 100% | 29.05 | 705 / 705 |
liver | 100% | 2326.74 | 226 / 226 | 100% | 20.48 | 406 / 406 |
ovary | 100% | 1198.71 | 180 / 180 | 100% | 21.24 | 430 / 430 |
prostate | 100% | 1453.03 | 245 / 245 | 100% | 29.05 | 502 / 502 |
skin | 100% | 2146.15 | 1809 / 1809 | 100% | 26.67 | 472 / 472 |
esophagus | 100% | 1493.63 | 1444 / 1445 | 100% | 19.91 | 183 / 183 |
breast | 100% | 1581.31 | 459 / 459 | 100% | 26.30 | 1117 / 1118 |
intestine | 100% | 1402.42 | 966 / 966 | 100% | 25.51 | 526 / 527 |
uterus | 100% | 1266.59 | 170 / 170 | 100% | 23.83 | 458 / 459 |
kidney | 100% | 2018.09 | 89 / 89 | 100% | 18.56 | 899 / 901 |
stomach | 100% | 1336.78 | 358 / 359 | 100% | 22.65 | 286 / 286 |
pancreas | 100% | 1043.45 | 327 / 328 | 100% | 16.16 | 178 / 178 |
thymus | 100% | 1541.90 | 652 / 653 | 100% | 19.51 | 604 / 605 |
bladder | 100% | 1419.76 | 21 / 21 | 100% | 23.80 | 502 / 504 |
adrenal gland | 100% | 2997.52 | 258 / 258 | 100% | 24.74 | 229 / 230 |
lung | 91% | 1008.91 | 527 / 578 | 100% | 19.53 | 1155 / 1155 |
adipose | 100% | 1385.59 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 23.03 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 26.34 | 29 / 29 |
spleen | 100% | 1370.04 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 26.01 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 27.77 | 1 / 1 |
muscle | 100% | 1561.20 | 801 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1008.76 | 1331 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 1708.31 | 837 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 59% | 726.77 | 546 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1990481 | Biological process | mRNA pseudouridine synthesis |
GO_0070131 | Biological process | positive regulation of mitochondrial translation |
GO_0006397 | Biological process | mRNA processing |
GO_0008033 | Biological process | tRNA processing |
GO_0035770 | Cellular component | ribonucleoprotein granule |
GO_0005739 | Cellular component | mitochondrion |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0009982 | Molecular function | pseudouridine synthase activity |
GO_0160148 | Molecular function | tRNA pseudouridine(55) synthase activity |
GO_0003723 | Molecular function | RNA binding |
Gene name | TRUB2 |
Protein name | Pseudouridylate synthase TRUB2, mitochondrial (EC 5.4.99.-) (TruB pseudouridine synthase homolog 2) (tRNA pseudouridine 55 synthase TRUB2) (Psi55 synthase TRUB2) (EC 5.4.99.25) |
Synonyms | |
Description | FUNCTION: Minor enzyme contributing to the isomerization of uridine to pseudouridine (pseudouridylation) of specific mitochondrial mRNAs (mt-mRNAs) such as COXI and COXIII mt-mRNAs . As a component of a functional protein-RNA module, consisting of RCC1L, NGRN, RPUSD3, RPUSD4, TRUB2, FASTKD2 and 16S mitochondrial ribosomal RNA (16S mt-rRNA), controls 16S mt-rRNA abundance and is required for intra-mitochondrial translation . Also catalyzes pseudouridylation of some tRNAs, including synthesis of pseudouridine(55) from uracil-55, in the psi GC loop of a subset of tRNAs . . |
Accessions | ENST00000372890.6 [O95900-1] O95900 |