Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal cone cell | 7 studies | 35% ± 17% | |
retinal rod cell | 7 studies | 26% ± 6% | |
interneuron | 5 studies | 24% ± 8% | |
retinal ganglion cell | 5 studies | 48% ± 24% | |
GABAergic neuron | 5 studies | 32% ± 9% | |
microglial cell | 4 studies | 23% ± 4% | |
neuron | 4 studies | 28% ± 4% | |
glutamatergic neuron | 4 studies | 48% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 86% | 1098.81 | 211 / 245 | 100% | 31.20 | 501 / 502 |
brain | 76% | 997.83 | 2013 / 2642 | 84% | 7.45 | 594 / 705 |
stomach | 74% | 443.91 | 267 / 359 | 61% | 3.34 | 175 / 286 |
intestine | 49% | 540.79 | 472 / 966 | 68% | 3.67 | 358 / 527 |
adrenal gland | 38% | 110.43 | 98 / 258 | 69% | 5.14 | 159 / 230 |
ovary | 69% | 260.73 | 124 / 180 | 27% | 1.18 | 116 / 430 |
blood vessel | 91% | 990.75 | 1211 / 1335 | 0% | 0 | 0 / 0 |
breast | 34% | 148.54 | 154 / 459 | 57% | 6.58 | 633 / 1118 |
esophagus | 24% | 76.11 | 350 / 1445 | 46% | 2.65 | 84 / 183 |
lung | 39% | 87.58 | 224 / 578 | 27% | 1.53 | 313 / 1155 |
uterus | 14% | 34.20 | 23 / 170 | 30% | 1.80 | 139 / 459 |
pancreas | 13% | 26.06 | 41 / 328 | 26% | 1.20 | 46 / 178 |
skin | 4% | 8.44 | 65 / 1809 | 33% | 1.31 | 155 / 472 |
thymus | 2% | 8.40 | 15 / 653 | 29% | 3.35 | 174 / 605 |
bladder | 0% | 0 | 0 / 21 | 29% | 1.56 | 146 / 504 |
lymph node | 0% | 0 | 0 / 0 | 28% | 0.99 | 8 / 29 |
kidney | 1% | 1.97 | 1 / 89 | 12% | 0.38 | 105 / 901 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.51 | 5 / 45 |
spleen | 6% | 13.11 | 15 / 241 | 0% | 0 | 0 / 0 |
adipose | 4% | 9.32 | 52 / 1204 | 0% | 0 | 0 / 0 |
liver | 1% | 1.87 | 2 / 226 | 3% | 0.12 | 13 / 406 |
eye | 0% | 0 | 0 / 0 | 1% | 0.15 | 1 / 80 |
muscle | 0% | 2.72 | 2 / 803 | 0% | 0 | 0 / 0 |
heart | 0% | 0.23 | 1 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0070507 | Biological process | regulation of microtubule cytoskeleton organization |
GO_0007340 | Biological process | acrosome reaction |
GO_0000281 | Biological process | mitotic cytokinesis |
GO_0051726 | Biological process | regulation of cell cycle |
GO_0007051 | Biological process | spindle organization |
GO_0005737 | Cellular component | cytoplasm |
GO_0001669 | Cellular component | acrosomal vesicle |
GO_0005829 | Cellular component | cytosol |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005886 | Cellular component | plasma membrane |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0043014 | Molecular function | alpha-tubulin binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | TRIM36 |
Protein name | Tripartite motif containing 36 RING-type E3 ubiquitin transferase (EC 2.3.2.27) E3 ubiquitin-protein ligase TRIM36 (EC 2.3.2.27) (RING finger protein 98) (RING-type E3 ubiquitin transferase TRIM36) (Tripartite motif-containing protein 36) (Zinc-binding protein Rbcc728) |
Synonyms | RNF98 RBCC728 |
Description | FUNCTION: E3 ubiquitin-protein ligase which mediates ubiquitination and subsequent proteasomal degradation of target proteins. Involved in chromosome segregation and cell cycle regulation . May play a role in the acrosome reaction and fertilization. . |
Accessions | ENST00000282369.7 [Q9NQ86-1] ENST00000379617.2 [Q9NQ86-3] ENST00000513154.6 [Q9NQ86-4] Q9NQ86 D6RAU9 E9PBG3 ENST00000514154.1 ENST00000379618.6 [Q9NQ86-2] ENST00000508894.1 |