Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 9 studies | 40% ± 15% | |
enterocyte | 6 studies | 49% ± 20% | |
goblet cell | 6 studies | 42% ± 8% | |
basal cell | 6 studies | 39% ± 15% | |
transit amplifying cell | 5 studies | 44% ± 19% | |
respiratory goblet cell | 4 studies | 25% ± 14% | |
secretory cell | 4 studies | 31% ± 16% | |
ciliated cell | 4 studies | 29% ± 15% | |
squamous epithelial cell | 3 studies | 38% ± 23% | |
intestinal crypt stem cell | 3 studies | 32% ± 15% | |
club cell | 3 studies | 32% ± 12% | |
progenitor cell | 3 studies | 56% ± 11% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
intestine | 5 studies | 32% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 2119.24 | 245 / 245 | 99% | 118.49 | 498 / 502 |
esophagus | 100% | 2689.75 | 1445 / 1445 | 99% | 115.54 | 181 / 183 |
intestine | 100% | 5253.83 | 963 / 966 | 99% | 299.65 | 522 / 527 |
stomach | 100% | 2412.98 | 358 / 359 | 96% | 202.02 | 275 / 286 |
uterus | 99% | 1349.04 | 168 / 170 | 96% | 187.75 | 439 / 459 |
lung | 96% | 928.22 | 554 / 578 | 97% | 110.80 | 1119 / 1155 |
bladder | 95% | 1676.29 | 20 / 21 | 97% | 206.61 | 490 / 504 |
breast | 95% | 860.51 | 435 / 459 | 97% | 90.53 | 1086 / 1118 |
thymus | 100% | 1800.06 | 652 / 653 | 91% | 80.64 | 548 / 605 |
brain | 93% | 1240.13 | 2459 / 2642 | 95% | 61.30 | 668 / 705 |
pancreas | 87% | 591.17 | 286 / 328 | 98% | 135.63 | 175 / 178 |
kidney | 99% | 1389.89 | 88 / 89 | 84% | 68.51 | 757 / 901 |
skin | 98% | 2728.29 | 1765 / 1809 | 74% | 54.02 | 350 / 472 |
ovary | 94% | 648.69 | 170 / 180 | 76% | 44.69 | 325 / 430 |
adrenal gland | 76% | 440.11 | 195 / 258 | 49% | 22.12 | 112 / 230 |
tonsil | 0% | 0 | 0 / 0 | 100% | 196.25 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 349.35 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 81% | 44.99 | 65 / 80 |
adipose | 79% | 486.79 | 951 / 1204 | 0% | 0 | 0 / 0 |
spleen | 77% | 406.99 | 186 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 67% | 455.64 | 895 / 1335 | 0% | 0 | 0 / 0 |
liver | 32% | 156.58 | 72 / 226 | 31% | 24.09 | 126 / 406 |
heart | 55% | 299.57 | 477 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 17% | 8.23 | 5 / 29 |
muscle | 4% | 16.61 | 33 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 2.33 | 3 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0005575 | Cellular component | cellular_component |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | TMEM54 |
Protein name | Transmembrane protein 54 (Beta-casein-like protein) (Protein CAC-1) |
Synonyms | BCLP CAC1 |
Description | |
Accessions | ENST00000373463.8 [Q969K7-1] ENST00000329151.5 [Q969K7-3] Q969K7 |