Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 23% ± 5% | |
fibroblast | 14 studies | 23% ± 9% | |
smooth muscle cell | 14 studies | 24% ± 7% | |
astrocyte | 13 studies | 28% ± 11% | |
pericyte | 12 studies | 31% ± 16% | |
endothelial cell of artery | 8 studies | 21% ± 3% | |
capillary endothelial cell | 5 studies | 22% ± 5% | |
myofibroblast cell | 4 studies | 24% ± 10% | |
connective tissue cell | 4 studies | 23% ± 6% | |
GABAergic neuron | 4 studies | 28% ± 6% | |
glomerular endothelial cell | 3 studies | 42% ± 3% | |
Mueller cell | 3 studies | 37% ± 14% | |
endothelial cell of vascular tree | 3 studies | 25% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 98% | 3885.78 | 241 / 245 | 96% | 35.10 | 480 / 502 |
breast | 100% | 3927.82 | 459 / 459 | 84% | 31.32 | 936 / 1118 |
brain | 82% | 3531.91 | 2176 / 2642 | 98% | 90.92 | 694 / 705 |
kidney | 88% | 1961.57 | 78 / 89 | 92% | 68.05 | 833 / 901 |
thymus | 98% | 3079.84 | 643 / 653 | 79% | 19.63 | 476 / 605 |
bladder | 100% | 4631.05 | 21 / 21 | 72% | 29.72 | 364 / 504 |
lung | 99% | 3736.25 | 573 / 578 | 72% | 15.63 | 826 / 1155 |
adrenal gland | 95% | 2015.47 | 245 / 258 | 75% | 26.22 | 173 / 230 |
ovary | 98% | 2636.35 | 177 / 180 | 67% | 16.72 | 288 / 430 |
uterus | 99% | 6223.09 | 169 / 170 | 50% | 23.29 | 230 / 459 |
stomach | 75% | 2171.26 | 268 / 359 | 67% | 18.54 | 192 / 286 |
esophagus | 78% | 5208.62 | 1128 / 1445 | 62% | 15.03 | 114 / 183 |
intestine | 87% | 3698.15 | 841 / 966 | 51% | 12.24 | 268 / 527 |
liver | 64% | 931.80 | 145 / 226 | 52% | 10.16 | 212 / 406 |
pancreas | 15% | 171.29 | 48 / 328 | 93% | 31.57 | 166 / 178 |
blood vessel | 100% | 17638.59 | 1335 / 1335 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 26.12 | 1 / 1 |
adipose | 100% | 4525.36 | 1202 / 1204 | 0% | 0 | 0 / 0 |
muscle | 96% | 2489.10 | 772 / 803 | 0% | 0 | 0 / 0 |
heart | 93% | 2455.87 | 804 / 861 | 0% | 0 | 0 / 0 |
skin | 62% | 2438.87 | 1130 / 1809 | 25% | 11.68 | 119 / 472 |
tonsil | 0% | 0 | 0 / 0 | 38% | 7.13 | 17 / 45 |
spleen | 12% | 168.88 | 29 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 10% | 1.71 | 8 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.32 | 1 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0008150 | Biological process | biological_process |
GO_0005911 | Cellular component | cell-cell junction |
GO_0005912 | Cellular component | adherens junction |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003674 | Molecular function | molecular_function |
Gene name | TMEM47 |
Protein name | Transmembrane protein 47 (Brain cell membrane protein 1) (Transmembrane 4 superfamily member 10) |
Synonyms | TM4SF10 BCMP1 |
Description | FUNCTION: Regulates cell junction organization in epithelial cells. May play a role in the transition from adherens junction to tight junction assembly. May regulate F-actin polymerization required for tight junctional localization dynamics and affect the junctional localization of PARD6B. During podocyte differentiation may negatively regulate activity of FYN and subsequently the abundance of nephrin (By similarity). . |
Accessions | ENST00000275954.4 Q9BQJ4 |