TMCC3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	17 studies	28% ± 11%	Explore
oligodendrocyte	11 studies	31% ± 10%	Explore
microglial cell	9 studies	33% ± 12%	Explore
epithelial cell	5 studies	20% ± 4%	Explore
macrophage	5 studies	26% ± 12%	Explore
podocyte	4 studies	24% ± 5%	Explore
endothelial cell of vascular tree	4 studies	24% ± 10%	Explore
dendritic cell	3 studies	16% ± 1%	Explore
GABAergic neuron	3 studies	23% ± 3%	Explore
oligodendrocyte precursor cell	3 studies	25% ± 2%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	3 studies	33% ± 11%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	99%	1438.91	242 / 245	100%	25.17	500 / 502
brain	93%	1505.08	2468 / 2642	99%	20.45	698 / 705
kidney	100%	1263.87	89 / 89	91%	21.52	821 / 901
thymus	100%	1666.53	651 / 653	89%	36.63	540 / 605
esophagus	100%	1262.16	1439 / 1445	87%	13.47	159 / 183
intestine	99%	1748.06	955 / 966	86%	11.43	452 / 527
stomach	95%	673.55	340 / 359	87%	10.99	248 / 286
lung	98%	1268.39	566 / 578	80%	8.90	928 / 1155
uterus	100%	1519.72	170 / 170	77%	11.01	353 / 459
breast	100%	2107.35	458 / 459	66%	6.15	736 / 1118
adrenal gland	74%	390.02	190 / 258	92%	13.94	211 / 230
ovary	99%	1053.26	179 / 180	63%	10.28	269 / 430
bladder	100%	1240.24	21 / 21	61%	7.01	309 / 504
skin	77%	1076.25	1396 / 1809	39%	3.60	186 / 472
pancreas	27%	118.31	87 / 328	90%	12.93	160 / 178
spleen	100%	1745.03	241 / 241	0%	0	0 / 0
muscle	100%	2886.44	802 / 803	0%	0	0 / 0
adipose	100%	2431.49	1202 / 1204	0%	0	0 / 0
peripheral blood	99%	3626.00	924 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	89%	11.76	40 / 45
blood vessel	74%	549.81	992 / 1335	0%	0	0 / 0
liver	19%	95.19	43 / 226	40%	2.96	164 / 406
lymph node	0%	0	0 / 0	59%	6.31	17 / 29
heart	51%	265.47	438 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	9%	0.52	7 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1