TM2D2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	8 studies	21% ± 8%	Explore
fibroblast	7 studies	26% ± 8%	Explore
epithelial cell	4 studies	37% ± 13%	Explore
macrophage	4 studies	24% ± 7%	Explore
pancreatic A cell	3 studies	20% ± 2%	Explore
connective tissue cell	3 studies	27% ± 4%	Explore
endothelial cell of lymphatic vessel	3 studies	23% ± 5%	Explore
ciliated cell	3 studies	23% ± 2%	Explore
dendritic cell	3 studies	25% ± 3%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	4 studies	21% ± 5%	Explore
pancreas	3 studies	22% ± 5%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1255.70	1445 / 1445	100%	24.86	183 / 183
stomach	100%	1469.11	359 / 359	100%	25.34	286 / 286
uterus	100%	1701.22	170 / 170	100%	34.48	459 / 459
lung	100%	1964.88	578 / 578	100%	41.42	1154 / 1155
brain	100%	1641.01	2638 / 2642	100%	42.53	705 / 705
prostate	100%	1704.21	245 / 245	100%	39.55	501 / 502
ovary	100%	1882.36	180 / 180	100%	25.21	429 / 430
breast	100%	1707.42	459 / 459	100%	52.43	1115 / 1118
thymus	100%	2210.58	653 / 653	100%	37.58	603 / 605
intestine	100%	1372.21	966 / 966	100%	27.73	525 / 527
skin	100%	1850.73	1808 / 1809	99%	31.46	468 / 472
bladder	100%	1607.24	21 / 21	99%	33.27	499 / 504
kidney	100%	2013.24	89 / 89	99%	33.73	892 / 901
adrenal gland	100%	2341.95	258 / 258	99%	38.90	227 / 230
pancreas	98%	762.56	322 / 328	99%	35.70	177 / 178
liver	100%	1090.30	226 / 226	96%	19.09	390 / 406
adipose	100%	1820.95	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	25.43	29 / 29
spleen	100%	1976.26	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	29.05	45 / 45
ureter	0%	0	0 / 0	100%	36.91	1 / 1
blood vessel	100%	1396.90	1334 / 1335	0%	0	0 / 0
muscle	99%	804.58	795 / 803	0%	0	0 / 0
heart	99%	1148.10	851 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	96%	24.69	77 / 80
peripheral blood	85%	701.04	788 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0