TEX9 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
ciliated cell	19 studies	38% ± 13%	Explore
astrocyte	7 studies	33% ± 15%	Explore
glutamatergic neuron	4 studies	39% ± 13%	Explore
neuron	3 studies	19% ± 2%	Explore
epithelial cell	3 studies	26% ± 7%	Explore
retinal rod cell	3 studies	26% ± 8%	Explore
GABAergic neuron	3 studies	39% ± 10%	Explore
ependymal cell	3 studies	43% ± 15%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
brain	5 studies	30% ± 14%	Explore
eye	3 studies	21% ± 6%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	393.45	653 / 653	95%	3.54	576 / 605
kidney	100%	338.10	89 / 89	86%	3.22	779 / 901
brain	97%	182.71	2572 / 2642	89%	2.87	624 / 705
breast	92%	186.22	422 / 459	88%	2.98	980 / 1118
pancreas	97%	124.31	317 / 328	81%	1.76	145 / 178
adrenal gland	100%	233.28	257 / 258	76%	1.74	175 / 230
prostate	100%	198.47	245 / 245	73%	1.22	365 / 502
ovary	99%	200.14	179 / 180	73%	1.57	312 / 430
esophagus	97%	132.41	1397 / 1445	69%	1.51	126 / 183
lung	95%	184.52	549 / 578	66%	1.76	764 / 1155
uterus	99%	190.61	169 / 170	60%	1.53	274 / 459
stomach	99%	207.91	357 / 359	50%	1.05	144 / 286
intestine	99%	160.09	954 / 966	49%	0.92	259 / 527
bladder	95%	110.71	20 / 21	47%	0.97	237 / 504
skin	99%	167.52	1791 / 1809	40%	0.81	191 / 472
spleen	99%	156.21	238 / 241	0%	0	0 / 0
blood vessel	93%	122.90	1236 / 1335	0%	0	0 / 0
adipose	85%	76.28	1020 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	69%	1.41	31 / 45
lymph node	0%	0	0 / 0	62%	3.19	18 / 29
liver	26%	13.76	58 / 226	10%	0.22	40 / 406
heart	22%	13.69	191 / 861	0%	0	0 / 0
peripheral blood	20%	401.28	189 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	14%	0.20	11 / 80
muscle	8%	5.36	62 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1