TAFA3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal cone cell	4 studies	42% ± 24%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	85%	35.27	153 / 180	64%	1.97	276 / 430
brain	81%	54.04	2138 / 2642	34%	1.73	239 / 705
adrenal gland	50%	142.70	128 / 258	63%	69.55	145 / 230
skin	41%	4.62	740 / 1809	68%	6.69	321 / 472
thymus	73%	18.06	474 / 653	34%	0.94	205 / 605
uterus	73%	13.76	124 / 170	24%	1.90	112 / 459
eye	0%	0	0 / 0	88%	3.13	70 / 80
prostate	72%	16.05	176 / 245	11%	0.20	55 / 502
breast	46%	9.33	210 / 459	32%	3.17	360 / 1118
esophagus	34%	4.51	498 / 1445	8%	0.13	14 / 183
adipose	36%	8.30	434 / 1204	0%	0	0 / 0
bladder	19%	1.57	4 / 21	12%	0.43	59 / 504
tonsil	0%	0	0 / 0	24%	0.85	11 / 45
stomach	18%	2.19	66 / 359	4%	0.06	11 / 286
kidney	13%	1.24	12 / 89	8%	0.14	74 / 901
lung	8%	0.88	44 / 578	10%	0.34	115 / 1155
lymph node	0%	0	0 / 0	14%	0.16	4 / 29
spleen	13%	1.07	32 / 241	0%	0	0 / 0
intestine	11%	0.94	102 / 966	2%	0.07	10 / 527
pancreas	5%	0.40	16 / 328	4%	0.15	8 / 178
blood vessel	7%	0.60	92 / 1335	0%	0	0 / 0
heart	6%	0.50	54 / 861	0%	0	0 / 0
liver	2%	0.17	4 / 226	1%	0.02	5 / 406
muscle	1%	0.13	10 / 803	0%	0	0 / 0
peripheral blood	1%	0.08	7 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1