Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 4 studies | 17% ± 1% | |
epithelial cell | 4 studies | 30% ± 7% | |
astrocyte | 4 studies | 20% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1571.05 | 1445 / 1445 | 100% | 12.90 | 183 / 183 |
intestine | 100% | 1599.56 | 966 / 966 | 100% | 10.44 | 527 / 527 |
ovary | 100% | 1295.67 | 180 / 180 | 100% | 9.05 | 430 / 430 |
breast | 100% | 1834.58 | 459 / 459 | 100% | 11.55 | 1117 / 1118 |
thymus | 100% | 2344.98 | 653 / 653 | 100% | 14.52 | 604 / 605 |
lung | 100% | 1609.51 | 577 / 578 | 100% | 12.78 | 1155 / 1155 |
bladder | 100% | 1557.95 | 21 / 21 | 100% | 11.21 | 503 / 504 |
prostate | 100% | 1717.47 | 245 / 245 | 100% | 11.20 | 501 / 502 |
skin | 100% | 1539.58 | 1809 / 1809 | 100% | 13.09 | 471 / 472 |
uterus | 100% | 1579.86 | 170 / 170 | 100% | 11.54 | 458 / 459 |
kidney | 100% | 1474.10 | 89 / 89 | 100% | 9.83 | 899 / 901 |
pancreas | 100% | 804.97 | 327 / 328 | 100% | 10.34 | 178 / 178 |
stomach | 100% | 1376.11 | 359 / 359 | 100% | 10.78 | 285 / 286 |
brain | 100% | 812.30 | 2632 / 2642 | 100% | 9.75 | 705 / 705 |
adrenal gland | 100% | 1704.04 | 258 / 258 | 99% | 8.12 | 227 / 230 |
liver | 100% | 895.20 | 226 / 226 | 98% | 7.43 | 397 / 406 |
adipose | 100% | 1849.65 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 17.84 | 29 / 29 |
muscle | 100% | 1396.26 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2254.48 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.66 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.82 | 1 / 1 |
blood vessel | 100% | 1208.98 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 1322.36 | 856 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 1451.97 | 910 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 9.57 | 77 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051123 | Biological process | RNA polymerase II preinitiation complex assembly |
GO_0001833 | Biological process | inner cell mass cell proliferation |
GO_0051457 | Biological process | maintenance of protein location in nucleus |
GO_0060261 | Biological process | positive regulation of transcription initiation by RNA polymerase II |
GO_0006367 | Biological process | transcription initiation at RNA polymerase II promoter |
GO_0030154 | Biological process | cell differentiation |
GO_0001112 | Biological process | DNA-templated transcription open complex formation |
GO_0045598 | Biological process | regulation of fat cell differentiation |
GO_0042789 | Biological process | mRNA transcription by RNA polymerase II |
GO_0005669 | Cellular component | transcription factor TFIID complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0046982 | Molecular function | protein heterodimerization activity |
GO_0016251 | Molecular function | RNA polymerase II general transcription initiation factor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | TAF8 |
Protein name | TATA-box binding protein associated factor 8 Transcription initiation factor TFIID subunit 8 (Protein taube nuss) (TBP-associated factor 43 kDa) (TBP-associated factor 8) (Transcription initiation factor TFIID 43 kDa subunit) (TAFII-43) (TAFII43) (hTAFII43) Transcription initiation factor TFIID subunit 8 (TBP-associated factor 8) |
Synonyms | TBN TAFII43 |
Description | FUNCTION: The TFIID basal transcription factor complex plays a major role in the initiation of RNA polymerase II (Pol II)-dependent transcription . TFIID recognizes and binds promoters with or without a TATA box via its subunit TBP, a TATA-box-binding protein, and promotes assembly of the pre-initiation complex (PIC) . The TFIID complex consists of TBP and TBP-associated factors (TAFs), including TAF1, TAF2, TAF3, TAF4, TAF5, TAF6, TAF7, TAF8, TAF9, TAF10, TAF11, TAF12 and TAF13 . The TFIID complex structure can be divided into 3 modules TFIID-A, TFIID-B, and TFIID-C . TAF8 is involved in forming the TFIID-B module, together with TAF5 . Mediates both basal and activator-dependent transcription . Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however, does not seem to play a role in differentiation of myoblasts . Required for the integration of TAF10 in the TAF complex . May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo (By similarity). . |
Accessions | Q7Z7C8 ENST00000372978.7 ENST00000372977.8 [Q7Z7C8-1] A0A8I5QL33 ENST00000372982.8 [Q7Z7C8-4] B4DZU5 ENST00000465926.5 ENST00000687601.1 A0A8I5KTT0 ENST00000456846.6 [Q7Z7C8-2] A0A0A0MRR3 ENST00000686229.1 A0A8I5KVM3 A0A8I5QJI2 ENST00000494547.5 [Q7Z7C8-4] ENST00000687266.1 ENST00000685500.1 ENST00000688007.1 A0A8I5QL44 ENST00000686935.1 A0A8I5KXI2 |