Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 22% ± 9% | |
astrocyte | 5 studies | 25% ± 7% | |
glutamatergic neuron | 4 studies | 46% ± 15% | |
microglial cell | 3 studies | 19% ± 3% | |
epithelial cell | 3 studies | 28% ± 4% | |
ciliated cell | 3 studies | 23% ± 4% | |
rod bipolar cell | 3 studies | 29% ± 10% | |
GABAergic neuron | 3 studies | 41% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 21% ± 4% | |
interneuron | 3 studies | 37% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 471.63 | 1445 / 1445 | 100% | 15.78 | 183 / 183 |
ovary | 100% | 462.93 | 180 / 180 | 100% | 12.06 | 429 / 430 |
lung | 100% | 535.68 | 578 / 578 | 99% | 14.25 | 1149 / 1155 |
breast | 100% | 605.02 | 459 / 459 | 99% | 13.56 | 1109 / 1118 |
thymus | 100% | 609.71 | 653 / 653 | 99% | 13.46 | 596 / 605 |
bladder | 100% | 466.57 | 21 / 21 | 98% | 13.17 | 496 / 504 |
brain | 99% | 343.35 | 2610 / 2642 | 99% | 10.86 | 700 / 705 |
uterus | 100% | 578.06 | 170 / 170 | 98% | 15.56 | 450 / 459 |
prostate | 100% | 501.02 | 245 / 245 | 98% | 10.83 | 492 / 502 |
stomach | 100% | 319.08 | 359 / 359 | 97% | 9.80 | 278 / 286 |
intestine | 100% | 365.79 | 966 / 966 | 95% | 8.72 | 500 / 527 |
pancreas | 95% | 228.76 | 311 / 328 | 98% | 9.26 | 174 / 178 |
kidney | 100% | 515.18 | 89 / 89 | 92% | 10.95 | 832 / 901 |
skin | 100% | 837.44 | 1809 / 1809 | 92% | 12.54 | 433 / 472 |
adrenal gland | 100% | 484.89 | 257 / 258 | 88% | 8.00 | 202 / 230 |
liver | 94% | 184.84 | 212 / 226 | 69% | 4.24 | 280 / 406 |
adipose | 100% | 635.84 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 11.40 | 29 / 29 |
spleen | 100% | 429.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 12.08 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.09 | 1 / 1 |
blood vessel | 100% | 389.18 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 92% | 219.77 | 791 / 861 | 0% | 0 | 0 / 0 |
muscle | 91% | 206.97 | 727 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 71% | 279.59 | 655 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 63% | 4.80 | 50 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006351 | Biological process | DNA-templated transcription |
GO_0001188 | Biological process | RNA polymerase I preinitiation complex assembly |
GO_0042790 | Biological process | nucleolar large rRNA transcription by RNA polymerase I |
GO_0070860 | Cellular component | RNA polymerase I core factor complex |
GO_0005730 | Cellular component | nucleolus |
GO_0005668 | Cellular component | RNA polymerase transcription factor SL1 complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0017025 | Molecular function | TBP-class protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0001164 | Molecular function | RNA polymerase I core promoter sequence-specific DNA binding |
Gene name | TAF1B |
Protein name | TATA box-binding protein-associated factor RNA polymerase I subunit B (TATA box-binding protein-associated factor 1B) (Transcription initiation factor SL1/TIF-IB subunit B) TATA box-binding protein-associated factor RNA polymerase I subunit B (RNA polymerase I-specific TBP-associated factor 63 kDa) (TAFI63) (TATA box-binding protein-associated factor 1B) (TBP-associated factor 1B) (Transcription initiation factor SL1/TIF-IB subunit B) TATA-box binding protein associated factor, RNA polymerase I subunit B |
Synonyms | |
Description | FUNCTION: Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during transcription initiation such as pre-initiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment as a component of the SL1/TIF-IB complex and, possibly, directly through its interaction with RRN3. . FUNCTION: Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during transcription initiation such as pre-initiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment as a component of the SL1/TIF-IB complex and, possibly, directly through its interaction with RRN3. . |
Accessions | U3KQ75 ENST00000263663.10 [Q53T94-1] F8WE32 F8WDU0 ENST00000625239.2 ENST00000492648.2 ENST00000434858.5 Q53T94 ENST00000416181.1 |