Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 10 studies | 51% ± 21% | |
retinal cone cell | 9 studies | 54% ± 24% | |
retinal rod cell | 9 studies | 46% ± 19% | |
GABAergic neuron | 7 studies | 45% ± 21% | |
amacrine cell | 7 studies | 47% ± 21% | |
neuron | 6 studies | 38% ± 15% | |
interneuron | 6 studies | 44% ± 22% | |
retinal bipolar neuron | 5 studies | 58% ± 25% | |
retinal ganglion cell | 5 studies | 71% ± 30% | |
OFF-bipolar cell | 5 studies | 43% ± 21% | |
ON-bipolar cell | 5 studies | 46% ± 23% | |
pancreatic A cell | 4 studies | 37% ± 11% | |
retina horizontal cell | 4 studies | 39% ± 15% | |
oligodendrocyte precursor cell | 4 studies | 21% ± 3% | |
pancreatic D cell | 3 studies | 38% ± 12% | |
GABAergic interneuron | 3 studies | 30% ± 7% | |
granule cell | 3 studies | 29% ± 13% | |
rod bipolar cell | 3 studies | 67% ± 13% | |
enteroendocrine cell | 3 studies | 30% ± 13% | |
oligodendrocyte | 3 studies | 19% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 98% | 22809.23 | 2588 / 2642 | 99% | 102.59 | 699 / 705 |
adrenal gland | 32% | 1035.67 | 83 / 258 | 96% | 305.09 | 220 / 230 |
pancreas | 0% | 7.72 | 1 / 328 | 55% | 14.25 | 98 / 178 |
prostate | 0% | 0 | 0 / 245 | 45% | 3.68 | 225 / 502 |
skin | 0% | 4.22 | 4 / 1809 | 33% | 2.63 | 155 / 472 |
eye | 0% | 0 | 0 / 0 | 29% | 5.76 | 23 / 80 |
intestine | 11% | 192.56 | 103 / 966 | 13% | 1.81 | 66 / 527 |
breast | 0% | 0 | 0 / 459 | 22% | 4.33 | 242 / 1118 |
stomach | 2% | 39.71 | 8 / 359 | 14% | 1.69 | 39 / 286 |
lung | 0% | 0 | 0 / 578 | 13% | 1.43 | 152 / 1155 |
uterus | 0% | 0 | 0 / 170 | 12% | 1.06 | 56 / 459 |
thymus | 0% | 0 | 0 / 653 | 11% | 0.75 | 68 / 605 |
tonsil | 0% | 0 | 0 / 0 | 11% | 2.72 | 5 / 45 |
liver | 0% | 0 | 0 / 226 | 11% | 0.80 | 45 / 406 |
ovary | 0% | 0 | 0 / 180 | 11% | 0.97 | 46 / 430 |
bladder | 0% | 0 | 0 / 21 | 9% | 1.54 | 46 / 504 |
esophagus | 1% | 10.14 | 9 / 1445 | 8% | 1.04 | 14 / 183 |
kidney | 0% | 0 | 0 / 89 | 5% | 0.32 | 42 / 901 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.17 | 1 / 29 |
blood vessel | 0% | 5.96 | 4 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0016188 | Biological process | synaptic vesicle maturation |
GO_2000474 | Biological process | regulation of opioid receptor signaling pathway |
GO_0006897 | Biological process | endocytosis |
GO_0048169 | Biological process | regulation of long-term neuronal synaptic plasticity |
GO_0048488 | Biological process | synaptic vesicle endocytosis |
GO_0048499 | Biological process | synaptic vesicle membrane organization |
GO_0048168 | Biological process | regulation of neuronal synaptic plasticity |
GO_0048172 | Biological process | regulation of short-term neuronal synaptic plasticity |
GO_2000300 | Biological process | regulation of synaptic vesicle exocytosis |
GO_0098685 | Cellular component | Schaffer collateral - CA1 synapse |
GO_0031594 | Cellular component | neuromuscular junction |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0043195 | Cellular component | terminal bouton |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0043005 | Cellular component | neuron projection |
GO_0042734 | Cellular component | presynaptic membrane |
GO_0048786 | Cellular component | presynaptic active zone |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0060076 | Cellular component | excitatory synapse |
GO_0015485 | Molecular function | cholesterol binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0042169 | Molecular function | SH2 domain binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SYP |
Protein name | Synaptophysin Synaptophysin (Major synaptic vesicle protein p38) |
Synonyms | hCG_2039818 |
Description | FUNCTION: Possibly involved in structural functions as organizing other membrane components or in targeting the vesicles to the plasma membrane. Involved in the regulation of short-term and long-term synaptic plasticity (By similarity). . |
Accessions | P08247 ENST00000479808.5 [P08247-1] ENST00000472598.5 ENST00000263233.9 [P08247-1] F2Z3E1 H7C4W3 ENST00000376303.6 ENST00000466635.1 G5E9A2 |