Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 25% ± 9% | |
endothelial cell of artery | 9 studies | 31% ± 9% | |
capillary endothelial cell | 5 studies | 21% ± 3% | |
glutamatergic neuron | 5 studies | 33% ± 17% | |
vein endothelial cell | 5 studies | 18% ± 1% | |
endothelial cell of vascular tree | 5 studies | 22% ± 7% | |
type I pneumocyte | 4 studies | 25% ± 6% | |
cardiac muscle cell | 4 studies | 20% ± 5% | |
smooth muscle cell | 3 studies | 24% ± 3% | |
podocyte | 3 studies | 44% ± 14% | |
fibroblast | 3 studies | 23% ± 5% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 25% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 29347.04 | 258 / 258 | 99% | 71.67 | 228 / 230 |
lung | 99% | 19852.79 | 573 / 578 | 93% | 37.35 | 1076 / 1155 |
kidney | 97% | 13596.66 | 86 / 89 | 87% | 103.91 | 788 / 901 |
breast | 89% | 13045.97 | 410 / 459 | 92% | 28.36 | 1033 / 1118 |
prostate | 89% | 12566.93 | 217 / 245 | 90% | 27.21 | 452 / 502 |
thymus | 83% | 8442.78 | 545 / 653 | 95% | 42.85 | 575 / 605 |
intestine | 85% | 9354.45 | 822 / 966 | 91% | 26.54 | 480 / 527 |
uterus | 85% | 9741.16 | 144 / 170 | 86% | 26.86 | 395 / 459 |
bladder | 86% | 15008.95 | 18 / 21 | 78% | 20.18 | 394 / 504 |
ovary | 72% | 7826.41 | 129 / 180 | 91% | 40.48 | 392 / 430 |
esophagus | 64% | 8278.91 | 919 / 1445 | 97% | 46.43 | 178 / 183 |
stomach | 57% | 5853.77 | 203 / 359 | 93% | 36.41 | 266 / 286 |
brain | 66% | 13848.81 | 1745 / 2642 | 76% | 33.70 | 536 / 705 |
liver | 36% | 3049.06 | 82 / 226 | 96% | 35.69 | 391 / 406 |
pancreas | 30% | 2671.42 | 98 / 328 | 97% | 61.16 | 172 / 178 |
skin | 9% | 759.91 | 166 / 1809 | 92% | 25.84 | 433 / 472 |
blood vessel | 100% | 60678.92 | 1335 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 124693.72 | 803 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 56167.71 | 855 / 861 | 0% | 0 | 0 / 0 |
adipose | 98% | 16101.47 | 1179 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 27.68 | 77 / 80 |
tonsil | 0% | 0 | 0 / 0 | 93% | 42.38 | 42 / 45 |
spleen | 90% | 10061.46 | 216 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 24.89 | 23 / 29 |
peripheral blood | 14% | 1487.11 | 131 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0032233 | Biological process | positive regulation of actin filament bundle assembly |
GO_0098886 | Biological process | modification of dendritic spine |
GO_1905355 | Biological process | spine apparatus assembly |
GO_0043204 | Cellular component | perikaryon |
GO_0097444 | Cellular component | spine apparatus |
GO_0001725 | Cellular component | stress fiber |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0005829 | Cellular component | cytosol |
GO_0043197 | Cellular component | dendritic spine |
GO_0005886 | Cellular component | plasma membrane |
GO_0014069 | Cellular component | postsynaptic density |
GO_0030018 | Cellular component | Z disc |
GO_0005923 | Cellular component | bicellular tight junction |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
Gene name | SYNPO |
Protein name | SYNPO protein Synaptopodin Alternative protein SYNPO |
Synonyms | KIAA1029 |
Description | FUNCTION: Actin-associated protein that may play a role in modulating actin-based shape and motility of dendritic spines and renal podocyte foot processes. Seems to be essential for the formation of spine apparatuses in spines of telencephalic neurons, which is involved in synaptic plasticity (By similarity). . |
Accessions | Q8N3V7 ENST00000394243.5 [Q8N3V7-1] A7MD96 L8EC77 ENST00000519664.1 [Q8N3V7-3] ENST00000522122.1 [Q8N3V7-1] ENST00000307662.5 [Q8N3V7-2] |