Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| GABAergic neuron | 5 studies | 30% ± 6% | |
| astrocyte | 5 studies | 21% ± 4% | |
| glutamatergic neuron | 4 studies | 40% ± 7% | |
| endothelial cell | 3 studies | 19% ± 1% | |
| retina horizontal cell | 3 studies | 22% ± 5% | |
| interneuron | 3 studies | 37% ± 9% | |
| neuron | 3 studies | 28% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 81% | 225.71 | 370 / 459 | 85% | 3.75 | 954 / 1118 |
| esophagus | 85% | 1021.69 | 1222 / 1445 | 61% | 2.10 | 111 / 183 |
| lung | 81% | 247.83 | 467 / 578 | 62% | 1.87 | 720 / 1155 |
| prostate | 66% | 308.88 | 161 / 245 | 75% | 2.21 | 378 / 502 |
| intestine | 92% | 531.67 | 887 / 966 | 46% | 1.39 | 241 / 527 |
| bladder | 86% | 351.05 | 18 / 21 | 43% | 1.17 | 219 / 504 |
| thymus | 45% | 84.02 | 291 / 653 | 83% | 2.80 | 504 / 605 |
| uterus | 74% | 439.34 | 126 / 170 | 47% | 2.28 | 217 / 459 |
| brain | 34% | 60.85 | 896 / 2642 | 81% | 3.33 | 572 / 705 |
| adrenal gland | 74% | 208.35 | 192 / 258 | 36% | 0.70 | 82 / 230 |
| stomach | 53% | 504.00 | 191 / 359 | 55% | 2.96 | 156 / 286 |
| muscle | 100% | 2953.95 | 803 / 803 | 0% | 0 | 0 / 0 |
| blood vessel | 99% | 824.23 | 1322 / 1335 | 0% | 0 | 0 / 0 |
| skin | 60% | 227.32 | 1077 / 1809 | 37% | 1.03 | 176 / 472 |
| adipose | 89% | 287.45 | 1077 / 1204 | 0% | 0 | 0 / 0 |
| ovary | 38% | 85.44 | 69 / 180 | 44% | 0.99 | 190 / 430 |
| heart | 74% | 287.92 | 638 / 861 | 0% | 0 | 0 / 0 |
| pancreas | 0% | 0.54 | 1 / 328 | 63% | 1.94 | 112 / 178 |
| eye | 0% | 0 | 0 / 0 | 46% | 0.80 | 37 / 80 |
| kidney | 10% | 17.89 | 9 / 89 | 27% | 0.60 | 246 / 901 |
| tonsil | 0% | 0 | 0 / 0 | 36% | 0.93 | 16 / 45 |
| spleen | 16% | 23.95 | 38 / 241 | 0% | 0 | 0 / 0 |
| liver | 0% | 0 | 0 / 226 | 4% | 0.13 | 17 / 406 |
| peripheral blood | 0% | 0.16 | 1 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0045103 | Biological process | intermediate filament-based process |
| GO_0042383 | Cellular component | sarcolemma |
| GO_0005829 | Cellular component | cytosol |
| GO_0031594 | Cellular component | neuromuscular junction |
| GO_0048471 | Cellular component | perinuclear region of cytoplasm |
| GO_0030018 | Cellular component | Z disc |
| GO_0005882 | Cellular component | intermediate filament |
| GO_0005515 | Molecular function | protein binding |
| Gene name | SYNC |
| Protein name | Syncoilin (Syncoilin intermediate filament 1) (Syncoilin-1) Syncoilin, intermediate filament protein |
| Synonyms | SYNC1 |
| Description | FUNCTION: Atypical type III intermediate filament (IF) protein that may play a supportive role in the efficient coupling of mechanical stress between the myofibril and fiber exterior. May facilitate lateral force transmission during skeletal muscle contraction. Does not form homofilaments nor heterofilaments with other IF proteins. . |
| Accessions | C9JTN4 C9JSS1 Q9H7C4 ENST00000426909.1 ENST00000417633.1 ENST00000409190.8 [Q9H7C4-1] ENST00000373484.4 [Q9H7C4-2] |
