SYDE2 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
retinal rod cell	7 studies	23% ± 5%	Explore
ciliated cell	3 studies	17% ± 1%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	297.52	459 / 459	96%	8.03	1069 / 1118
stomach	100%	491.27	358 / 359	88%	3.28	253 / 286
ovary	99%	291.91	179 / 180	88%	2.31	378 / 430
lung	99%	355.28	573 / 578	87%	3.37	1007 / 1155
intestine	100%	914.18	964 / 966	86%	2.35	453 / 527
prostate	100%	219.39	244 / 245	85%	2.24	427 / 502
esophagus	97%	662.29	1402 / 1445	86%	3.86	157 / 183
bladder	100%	595.67	21 / 21	81%	2.44	408 / 504
thymus	100%	350.78	652 / 653	81%	2.60	489 / 605
pancreas	100%	284.85	328 / 328	70%	1.77	125 / 178
kidney	98%	178.20	87 / 89	70%	2.08	633 / 901
uterus	100%	347.23	170 / 170	61%	1.77	281 / 459
skin	97%	197.38	1763 / 1809	48%	1.16	225 / 472
liver	98%	205.10	221 / 226	35%	0.75	144 / 406
adrenal gland	98%	171.47	252 / 258	10%	0.20	23 / 230
ureter	0%	0	0 / 0	100%	1.68	1 / 1
adipose	100%	238.33	1198 / 1204	0%	0	0 / 0
blood vessel	99%	277.53	1326 / 1335	0%	0	0 / 0
heart	94%	326.16	810 / 861	0%	0	0 / 0
muscle	82%	93.40	656 / 803	0%	0	0 / 0
brain	25%	20.97	656 / 2642	24%	0.40	172 / 705
tonsil	0%	0	0 / 0	44%	1.17	20 / 45
eye	0%	0	0 / 0	44%	1.20	35 / 80
spleen	37%	33.99	89 / 241	0%	0	0 / 0
peripheral blood	13%	22.02	121 / 929	0%	0	0 / 0
lymph node	0%	0	0 / 0	7%	0.15	2 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0