I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| epithelial cell | 3 studies | 19% ± 2% | |
| GABAergic neuron | 3 studies | 31% ± 10% | |
| glutamatergic neuron | 3 studies | 35% ± 12% | |
| astrocyte | 3 studies | 18% ± 2% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| epithelial cell | 3 studies | 19% ± 2% | |
| GABAergic neuron | 3 studies | 31% ± 10% | |
| glutamatergic neuron | 3 studies | 35% ± 12% | |
| astrocyte | 3 studies | 18% ± 2% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 4 studies | 24% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1743.18 | 1445 / 1445 | 100% | 12.97 | 183 / 183 |
| liver | 100% | 1195.80 | 226 / 226 | 100% | 15.64 | 406 / 406 |
| ovary | 100% | 1671.63 | 180 / 180 | 100% | 22.25 | 430 / 430 |
| pancreas | 100% | 1027.13 | 328 / 328 | 100% | 18.94 | 178 / 178 |
| prostate | 100% | 2295.44 | 245 / 245 | 100% | 24.19 | 502 / 502 |
| skin | 100% | 1904.16 | 1809 / 1809 | 100% | 23.27 | 472 / 472 |
| stomach | 100% | 1375.83 | 359 / 359 | 100% | 15.77 | 286 / 286 |
| thymus | 100% | 2083.26 | 653 / 653 | 100% | 25.83 | 605 / 605 |
| uterus | 100% | 1814.91 | 170 / 170 | 100% | 24.79 | 459 / 459 |
| brain | 100% | 2232.33 | 2640 / 2642 | 100% | 30.25 | 705 / 705 |
| kidney | 100% | 1887.03 | 89 / 89 | 100% | 17.20 | 898 / 901 |
| intestine | 100% | 1779.98 | 966 / 966 | 100% | 18.49 | 525 / 527 |
| bladder | 100% | 1670.67 | 21 / 21 | 100% | 21.44 | 502 / 504 |
| adrenal gland | 100% | 2561.11 | 258 / 258 | 100% | 29.45 | 229 / 230 |
| breast | 100% | 1703.27 | 459 / 459 | 99% | 22.66 | 1112 / 1118 |
| lung | 99% | 1466.41 | 575 / 578 | 100% | 17.35 | 1153 / 1155 |
| adipose | 100% | 1468.37 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 25.45 | 80 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 32.13 | 29 / 29 |
| spleen | 100% | 2663.20 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 23.83 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 12.17 | 1 / 1 |
| blood vessel | 100% | 1530.79 | 1334 / 1335 | 0% | 0 | 0 / 0 |
| muscle | 100% | 1418.17 | 802 / 803 | 0% | 0 | 0 / 0 |
| heart | 99% | 1295.23 | 853 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 98% | 1559.92 | 914 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0008380 | Biological process | RNA splicing |
| GO_0006397 | Biological process | mRNA processing |
| GO_0005654 | Cellular component | nucleoplasm |
| GO_0005681 | Cellular component | spliceosomal complex |
| GO_0005515 | Molecular function | protein binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | SUGP1 |
| Protein name | SURP and G-patch domain-containing protein 1 (RNA-binding protein RBP) (Splicing factor 4) SURP and G-patch domain containing 1 (cDNA FLJ57089, highly similar to Splicing factor 4) SURP and G-patch domain containing 1 |
| Synonyms | SF4 |
| Description | FUNCTION: Plays a role in pre-mRNA splicing. |
| Accessions | K7EM86 ENST00000589144.5 K7ESM0 ENST00000590439.2 ENST00000591350.5 ENST00000535070.5 Q8IWZ8 K7ELR6 B4DVK3 K7ES12 ENST00000587119.5 ENST00000585444.1 V9GZ08 ENST00000247001.10 [Q8IWZ8-1] ENST00000588731.6 [Q8IWZ8-2] |
