Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 10 studies | 28% ± 16% | |
oligodendrocyte precursor cell | 9 studies | 27% ± 12% | |
astrocyte | 8 studies | 27% ± 11% | |
macrophage | 7 studies | 22% ± 6% | |
oligodendrocyte | 7 studies | 25% ± 7% | |
microglial cell | 6 studies | 23% ± 6% | |
natural killer cell | 5 studies | 18% ± 1% | |
interneuron | 5 studies | 33% ± 21% | |
neuron | 5 studies | 32% ± 17% | |
epithelial cell | 5 studies | 49% ± 16% | |
Mueller cell | 5 studies | 29% ± 9% | |
GABAergic neuron | 5 studies | 37% ± 15% | |
T cell | 4 studies | 17% ± 1% | |
ciliated cell | 4 studies | 22% ± 6% | |
retinal rod cell | 4 studies | 28% ± 10% | |
glutamatergic neuron | 4 studies | 45% ± 14% | |
goblet cell | 4 studies | 22% ± 9% | |
pancreatic A cell | 3 studies | 32% ± 19% | |
classical monocyte | 3 studies | 17% ± 1% | |
hematopoietic precursor cell | 3 studies | 28% ± 11% | |
retinal ganglion cell | 3 studies | 23% ± 1% | |
plasma cell | 3 studies | 24% ± 6% | |
retinal cone cell | 3 studies | 26% ± 8% | |
mesothelial cell | 3 studies | 38% ± 16% | |
lymphocyte | 3 studies | 21% ± 1% | |
GABAergic amacrine cell | 3 studies | 25% ± 9% | |
basal cell | 3 studies | 39% ± 30% | |
dendritic cell | 3 studies | 25% ± 7% | |
gamma-delta T cell | 3 studies | 21% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1785.68 | 1445 / 1445 | 100% | 27.42 | 183 / 183 |
breast | 100% | 2045.59 | 459 / 459 | 100% | 59.16 | 1117 / 1118 |
uterus | 100% | 2439.48 | 170 / 170 | 100% | 26.69 | 458 / 459 |
lung | 100% | 1908.15 | 577 / 578 | 100% | 28.09 | 1153 / 1155 |
brain | 100% | 1681.57 | 2636 / 2642 | 100% | 30.52 | 704 / 705 |
prostate | 100% | 2128.72 | 245 / 245 | 100% | 30.23 | 500 / 502 |
ovary | 100% | 3405.03 | 180 / 180 | 100% | 21.73 | 428 / 430 |
pancreas | 100% | 3941.04 | 328 / 328 | 99% | 25.31 | 177 / 178 |
thymus | 100% | 2097.08 | 653 / 653 | 99% | 24.42 | 597 / 605 |
bladder | 100% | 3040.48 | 21 / 21 | 98% | 24.29 | 496 / 504 |
adrenal gland | 100% | 2406.96 | 258 / 258 | 98% | 23.86 | 226 / 230 |
intestine | 100% | 1841.02 | 966 / 966 | 95% | 20.40 | 503 / 527 |
kidney | 100% | 1625.60 | 89 / 89 | 95% | 17.77 | 857 / 901 |
stomach | 100% | 1708.78 | 359 / 359 | 95% | 20.39 | 271 / 286 |
skin | 100% | 2602.11 | 1809 / 1809 | 92% | 27.65 | 436 / 472 |
liver | 96% | 911.21 | 218 / 226 | 84% | 15.45 | 343 / 406 |
blood vessel | 100% | 1582.54 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1967.15 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 18.16 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.67 | 1 / 1 |
adipose | 100% | 2164.55 | 1203 / 1204 | 0% | 0 | 0 / 0 |
heart | 96% | 1353.94 | 828 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 79% | 10.03 | 23 / 29 |
muscle | 74% | 420.66 | 596 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 71% | 848.65 | 655 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 60% | 8.80 | 48 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001503 | Biological process | ossification |
GO_0032967 | Biological process | positive regulation of collagen biosynthetic process |
GO_0045669 | Biological process | positive regulation of osteoblast differentiation |
GO_0046850 | Biological process | regulation of bone remodeling |
GO_0005791 | Cellular component | rough endoplasmic reticulum |
GO_0030867 | Cellular component | rough endoplasmic reticulum membrane |
GO_0016020 | Cellular component | membrane |
GO_0005737 | Cellular component | cytoplasm |
Gene name | SUCO |
Protein name | SUN domain containing ossification factor SUN domain containing ossification factor (cDNA FLJ60972) SUN domain-containing ossification factor (Membrane protein CH1) (Protein osteopotentia homolog) (SUN-like protein 1) |
Synonyms | C1orf9 OPT CH1 SLP1 |
Description | FUNCTION: Required for bone modeling during late embryogenesis. Regulates type I collagen synthesis in osteoblasts during their postnatal maturation (By similarity). . |
Accessions | ENST00000610051.5 A0A087WV04 ENST00000263688.4 [Q9UBS9-1] Q9UBS9 B4DYM4 ENST00000616058.4 ENST00000367723.8 [Q9UBS9-2] |