Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 9 studies | 21% ± 6% | |
microglial cell | 6 studies | 27% ± 11% | |
glutamatergic neuron | 6 studies | 40% ± 21% | |
endothelial cell | 5 studies | 27% ± 9% | |
GABAergic neuron | 5 studies | 34% ± 14% | |
myeloid cell | 4 studies | 18% ± 2% | |
epithelial cell | 4 studies | 27% ± 9% | |
astrocyte | 4 studies | 24% ± 3% | |
oligodendrocyte | 4 studies | 21% ± 4% | |
oligodendrocyte precursor cell | 4 studies | 27% ± 6% | |
classical monocyte | 3 studies | 18% ± 0% | |
neuron | 3 studies | 24% ± 7% | |
alveolar macrophage | 3 studies | 24% ± 8% | |
basal cell | 3 studies | 23% ± 0% | |
interneuron | 3 studies | 35% ± 18% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 8 studies | 30% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 2716.23 | 2642 / 2642 | 100% | 36.18 | 705 / 705 |
breast | 100% | 1880.87 | 459 / 459 | 100% | 38.46 | 1118 / 1118 |
esophagus | 100% | 2323.30 | 1445 / 1445 | 100% | 29.81 | 183 / 183 |
lung | 100% | 2544.00 | 578 / 578 | 100% | 33.64 | 1155 / 1155 |
ovary | 100% | 1850.41 | 180 / 180 | 100% | 19.97 | 430 / 430 |
uterus | 100% | 1833.15 | 170 / 170 | 100% | 36.22 | 459 / 459 |
bladder | 100% | 2051.48 | 21 / 21 | 100% | 29.22 | 503 / 504 |
thymus | 100% | 2208.26 | 653 / 653 | 100% | 29.62 | 603 / 605 |
prostate | 100% | 1951.38 | 245 / 245 | 100% | 18.98 | 500 / 502 |
skin | 100% | 2879.72 | 1809 / 1809 | 100% | 28.14 | 470 / 472 |
intestine | 100% | 1493.89 | 966 / 966 | 99% | 19.47 | 522 / 527 |
stomach | 99% | 985.97 | 357 / 359 | 99% | 19.13 | 282 / 286 |
kidney | 100% | 1529.45 | 89 / 89 | 98% | 18.24 | 881 / 901 |
adrenal gland | 100% | 1359.71 | 258 / 258 | 93% | 13.81 | 215 / 230 |
pancreas | 79% | 498.27 | 259 / 328 | 99% | 23.38 | 176 / 178 |
liver | 82% | 510.12 | 186 / 226 | 70% | 7.87 | 285 / 406 |
adipose | 100% | 2048.05 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 20.36 | 29 / 29 |
spleen | 100% | 1836.00 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 33.73 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.09 | 1 / 1 |
blood vessel | 100% | 1942.65 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 2170.62 | 915 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 19.17 | 78 / 80 |
heart | 93% | 884.71 | 798 / 861 | 0% | 0 | 0 / 0 |
muscle | 83% | 510.12 | 665 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016189 | Biological process | synaptic vesicle to endosome fusion |
GO_0032880 | Biological process | regulation of protein localization |
GO_0006886 | Biological process | intracellular protein transport |
GO_0032456 | Biological process | endocytic recycling |
GO_0048193 | Biological process | Golgi vesicle transport |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0048278 | Biological process | vesicle docking |
GO_0006906 | Biological process | vesicle fusion |
GO_0005886 | Cellular component | plasma membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0012505 | Cellular component | endomembrane system |
GO_0055037 | Cellular component | recycling endosome |
GO_0005769 | Cellular component | early endosome |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0030136 | Cellular component | clathrin-coated vesicle |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0045335 | Cellular component | phagocytic vesicle |
GO_0031201 | Cellular component | SNARE complex |
GO_0000149 | Molecular function | SNARE binding |
GO_0005484 | Molecular function | SNAP receptor activity |
GO_0005515 | Molecular function | protein binding |
GO_0019905 | Molecular function | syntaxin binding |
Gene name | STX6 |
Protein name | Syntaxin-6 |
Synonyms | |
Description | FUNCTION: SNARE promoting movement of transport vesicles to target membranes. Targets endosomes to the trans-Golgi network, and may therefore function in retrograde trafficking. Together with SNARE STX12, promotes movement of vesicles from endosomes to the cell membrane, and may therefore function in the endocytic recycling pathway. . |
Accessions | O43752 ENST00000258301.6 [O43752-1] ENST00000542060.5 [O43752-2] |