SRR | OmnibusX

sc-RNAseq data

Insufficient scRNA-seq data for expression of SRR at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	226.68	245 / 245	100%	5.13	502 / 502
brain	100%	304.80	2641 / 2642	100%	14.80	705 / 705
thymus	100%	198.42	653 / 653	100%	5.17	604 / 605
breast	100%	245.17	459 / 459	100%	6.32	1115 / 1118
esophagus	100%	244.66	1445 / 1445	99%	3.30	182 / 183
uterus	100%	240.52	170 / 170	99%	4.42	453 / 459
skin	100%	272.28	1808 / 1809	99%	5.15	466 / 472
pancreas	100%	158.49	327 / 328	99%	3.18	176 / 178
stomach	100%	175.27	358 / 359	98%	3.12	281 / 286
bladder	100%	232.52	21 / 21	98%	3.28	493 / 504
ovary	99%	201.64	179 / 180	98%	3.53	422 / 430
kidney	100%	160.69	89 / 89	97%	4.09	878 / 901
lung	98%	172.49	567 / 578	99%	3.33	1146 / 1155
intestine	100%	243.23	966 / 966	97%	2.85	511 / 527
adrenal gland	100%	311.81	258 / 258	96%	3.33	220 / 230
liver	96%	92.35	216 / 226	91%	2.08	369 / 406
adipose	100%	222.59	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	3.61	29 / 29
spleen	100%	169.88	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	3.77	45 / 45
ureter	0%	0	0 / 0	100%	1.81	1 / 1
muscle	100%	183.43	802 / 803	0%	0	0 / 0
blood vessel	99%	180.36	1328 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	96%	3.86	77 / 80
heart	95%	150.81	819 / 861	0%	0	0 / 0
peripheral blood	46%	109.72	430 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0070179	Biological process	D-serine biosynthetic process
GO_0014070	Biological process	response to organic cyclic compound
GO_0042866	Biological process	pyruvate biosynthetic process
GO_0070178	Biological process	D-serine metabolic process
GO_0009410	Biological process	response to xenobiotic stimulus
GO_0009069	Biological process	serine family amino acid metabolic process
GO_0032496	Biological process	response to lipopolysaccharide
GO_0006563	Biological process	L-serine metabolic process
GO_0043025	Cellular component	neuronal cell body
GO_0005829	Cellular component	cytosol
GO_0005737	Cellular component	cytoplasm
GO_0045177	Cellular component	apical part of cell
GO_0042803	Molecular function	protein homodimerization activity
GO_0030170	Molecular function	pyridoxal phosphate binding
GO_0030378	Molecular function	serine racemase activity
GO_0042802	Molecular function	identical protein binding
GO_0000287	Molecular function	magnesium ion binding
GO_0003941	Molecular function	L-serine ammonia-lyase activity
GO_0008721	Molecular function	D-serine ammonia-lyase activity
GO_0030165	Molecular function	PDZ domain binding
GO_0018114	Molecular function	threonine racemase activity
GO_0005524	Molecular function	ATP binding
GO_0016594	Molecular function	glycine binding
GO_0005509	Molecular function	calcium ion binding
GO_0005515	Molecular function	protein binding

Gene name	SRR
Protein name	L-serine ammonia-lyase (EC 4.3.1.17) Serine racemase Serine racemase (EC 5.1.1.18) (D-serine ammonia-lyase) (D-serine dehydratase) (EC 4.3.1.18) (L-serine ammonia-lyase) (L-serine dehydratase) (EC 4.3.1.17)
Synonyms
Description	FUNCTION: Catalyzes the synthesis of D-serine from L-serine. D-serine is a key coagonist with glutamate at NMDA receptors. Has dehydratase activity towards both L-serine and D-serine. .
Accessions	ENST00000576848.1 I3L4W4 ENST00000570662.2 ENST00000572709.5 Q3ZK31 ENST00000574229.1 ENST00000576620.5 ENST00000344595.10 V9GYE8 I3L4L3 ENST00000574987.1 I3L3N0 ENST00000575840.5 I3L4B4 Q9GZT4

SRR report