Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 10 studies | 28% ± 14% | |
glutamatergic neuron | 6 studies | 38% ± 18% | |
astrocyte | 6 studies | 38% ± 16% | |
oligodendrocyte | 6 studies | 29% ± 10% | |
GABAergic neuron | 5 studies | 36% ± 18% | |
microglial cell | 5 studies | 35% ± 14% | |
oligodendrocyte precursor cell | 5 studies | 33% ± 15% | |
pericyte | 5 studies | 27% ± 7% | |
epithelial cell | 4 studies | 23% ± 7% | |
interneuron | 4 studies | 59% ± 21% | |
fibroblast | 3 studies | 29% ± 9% | |
retinal cone cell | 3 studies | 28% ± 9% | |
retinal rod cell | 3 studies | 20% ± 4% | |
neural progenitor cell | 3 studies | 28% ± 6% | |
macrophage | 3 studies | 21% ± 3% | |
smooth muscle cell | 3 studies | 34% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 5745.07 | 245 / 245 | 100% | 32.54 | 502 / 502 |
thymus | 100% | 5758.65 | 653 / 653 | 100% | 19.39 | 605 / 605 |
breast | 100% | 4222.82 | 459 / 459 | 100% | 20.54 | 1117 / 1118 |
uterus | 100% | 5515.32 | 170 / 170 | 100% | 15.97 | 458 / 459 |
liver | 100% | 2501.97 | 226 / 226 | 100% | 12.84 | 405 / 406 |
brain | 100% | 3262.09 | 2633 / 2642 | 100% | 18.72 | 705 / 705 |
kidney | 100% | 3381.97 | 89 / 89 | 100% | 14.04 | 897 / 901 |
esophagus | 100% | 5909.64 | 1445 / 1445 | 99% | 13.04 | 182 / 183 |
skin | 100% | 3642.24 | 1808 / 1809 | 99% | 17.31 | 469 / 472 |
lung | 100% | 5423.60 | 578 / 578 | 99% | 14.80 | 1147 / 1155 |
intestine | 100% | 4762.29 | 966 / 966 | 99% | 10.70 | 523 / 527 |
stomach | 100% | 3134.31 | 359 / 359 | 99% | 10.39 | 283 / 286 |
pancreas | 99% | 2186.66 | 326 / 328 | 99% | 15.43 | 177 / 178 |
bladder | 100% | 5008.43 | 21 / 21 | 99% | 12.58 | 498 / 504 |
ovary | 100% | 4777.24 | 180 / 180 | 99% | 9.58 | 424 / 430 |
adrenal gland | 100% | 3847.88 | 258 / 258 | 95% | 16.02 | 219 / 230 |
adipose | 100% | 4142.08 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5704.10 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 15.74 | 29 / 29 |
spleen | 100% | 3662.75 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 15.22 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.99 | 1 / 1 |
muscle | 100% | 2269.37 | 799 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 3121.96 | 852 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 14.93 | 79 / 80 |
peripheral blood | 79% | 1757.24 | 737 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0051301 | Biological process | cell division |
GO_0007155 | Biological process | cell adhesion |
GO_0005815 | Cellular component | microtubule organizing center |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0031941 | Cellular component | filamentous actin |
GO_0005819 | Cellular component | spindle |
GO_0005737 | Cellular component | cytoplasm |
GO_0005921 | Cellular component | gap junction |
GO_0005515 | Molecular function | protein binding |
Gene name | SPECC1L |
Protein name | Cytospin-A (Renal carcinoma antigen NY-REN-22) (Sperm antigen with calponin homology and coiled-coil domains 1-like) (SPECC1-like protein) Sperm antigen with calponin homology and coiled-coil domains 1 like Cytospin-A |
Synonyms | KIAA0376 CYTSA |
Description | FUNCTION: Involved in cytokinesis and spindle organization. May play a role in actin cytoskeleton organization and microtubule stabilization and hence required for proper cell adhesion and migration. . FUNCTION: Involved in cytokinesis and spindle organization. May play a role in actin cytoskeleton organization and microtubule stabilization and hence required for proper cell adhesion and migration. . |
Accessions | C9JLY8 ENST00000651059.1 C9J8U1 Q69YQ0 ENST00000314328.14 [Q69YQ0-1] A0A494C1J1 ENST00000421374.5 ENST00000541492.1 [Q69YQ0-2] ENST00000440893.1 ENST00000437398.5 [Q69YQ0-1] |