Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 42% ± 17% | |
fibroblast | 14 studies | 39% ± 15% | |
astrocyte | 13 studies | 30% ± 14% | |
glutamatergic neuron | 8 studies | 45% ± 18% | |
adipocyte | 8 studies | 40% ± 12% | |
endothelial cell of lymphatic vessel | 7 studies | 47% ± 15% | |
ciliated cell | 6 studies | 39% ± 20% | |
smooth muscle cell | 5 studies | 26% ± 9% | |
type I pneumocyte | 5 studies | 20% ± 1% | |
type II pneumocyte | 5 studies | 32% ± 5% | |
GABAergic neuron | 4 studies | 32% ± 7% | |
endothelial cell of vascular tree | 4 studies | 32% ± 19% | |
club cell | 4 studies | 36% ± 12% | |
glomerular endothelial cell | 3 studies | 22% ± 0% | |
myofibroblast cell | 3 studies | 36% ± 26% | |
Mueller cell | 3 studies | 24% ± 4% | |
hepatocyte | 3 studies | 44% ± 14% | |
epithelial cell | 3 studies | 40% ± 18% | |
pericyte | 3 studies | 28% ± 7% | |
muscle cell | 3 studies | 40% ± 22% | |
oligodendrocyte precursor cell | 3 studies | 18% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 99% | 3901.50 | 242 / 245 | 99% | 5.41 | 497 / 502 |
breast | 100% | 5139.91 | 459 / 459 | 94% | 6.03 | 1053 / 1118 |
thymus | 100% | 9745.48 | 653 / 653 | 94% | 8.79 | 567 / 605 |
lung | 100% | 4077.28 | 577 / 578 | 90% | 4.72 | 1037 / 1155 |
ovary | 100% | 6632.53 | 180 / 180 | 85% | 4.06 | 366 / 430 |
adrenal gland | 98% | 2760.56 | 254 / 258 | 79% | 3.34 | 182 / 230 |
skin | 97% | 4505.39 | 1746 / 1809 | 77% | 9.88 | 363 / 472 |
esophagus | 86% | 1693.60 | 1244 / 1445 | 83% | 3.71 | 152 / 183 |
intestine | 89% | 2209.80 | 864 / 966 | 73% | 2.16 | 385 / 527 |
kidney | 88% | 1846.12 | 78 / 89 | 72% | 3.44 | 652 / 901 |
pancreas | 65% | 912.57 | 214 / 328 | 93% | 6.30 | 165 / 178 |
uterus | 99% | 6899.02 | 169 / 170 | 54% | 1.78 | 248 / 459 |
stomach | 68% | 1317.60 | 245 / 359 | 82% | 3.10 | 235 / 286 |
bladder | 100% | 3464.52 | 21 / 21 | 45% | 1.32 | 226 / 504 |
brain | 53% | 1015.74 | 1398 / 2642 | 89% | 2.83 | 630 / 705 |
liver | 72% | 1054.42 | 162 / 226 | 67% | 1.63 | 271 / 406 |
adipose | 100% | 7104.38 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 13.61 | 80 / 80 |
spleen | 100% | 4216.57 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 98% | 4847.12 | 1308 / 1335 | 0% | 0 | 0 / 0 |
muscle | 97% | 3413.65 | 779 / 803 | 0% | 0 | 0 / 0 |
heart | 74% | 1700.57 | 639 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 59% | 1.72 | 17 / 29 |
tonsil | 0% | 0 | 0 / 0 | 47% | 1.04 | 21 / 45 |
peripheral blood | 1% | 14.06 | 12 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007160 | Biological process | cell-matrix adhesion |
GO_0005576 | Cellular component | extracellular region |
GO_0031012 | Cellular component | extracellular matrix |
GO_0005112 | Molecular function | Notch binding |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | SNED1 |
Protein name | Sushi, nidogen and EGF-like domain-containing protein 1 (Insulin-responsive sequence DNA-binding protein 1) (IRE-BP1) Sushi, nidogen and EGF like domains 1 |
Synonyms | |
Description | |
Accessions | ENST00000310397.13 [Q8TER0-1] H7BYY9 ENST00000431690.5 ENST00000401884.5 [Q8TER0-5] Q8TER0 ENST00000401644.6 ENST00000405547.7 [Q8TER0-3] H7C0D4 ENST00000420591.1 H7C1R9 |