Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 18 studies | 32% ± 14% | |
smooth muscle cell | 16 studies | 31% ± 13% | |
pericyte | 11 studies | 25% ± 12% | |
endothelial cell | 5 studies | 26% ± 9% | |
mesothelial cell | 5 studies | 33% ± 14% | |
connective tissue cell | 4 studies | 29% ± 13% | |
myofibroblast cell | 4 studies | 34% ± 14% | |
retinal pigment epithelial cell | 3 studies | 51% ± 10% | |
muscle cell | 3 studies | 43% ± 25% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
uterus | 3 studies | 21% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 95% | 6466.48 | 437 / 459 | 93% | 98.23 | 1039 / 1118 |
prostate | 80% | 3373.93 | 197 / 245 | 100% | 110.48 | 501 / 502 |
ovary | 100% | 15600.18 | 180 / 180 | 64% | 21.37 | 276 / 430 |
intestine | 84% | 4247.62 | 812 / 966 | 78% | 58.13 | 413 / 527 |
stomach | 79% | 17339.33 | 282 / 359 | 75% | 56.36 | 215 / 286 |
bladder | 100% | 8960.57 | 21 / 21 | 51% | 30.83 | 255 / 504 |
uterus | 99% | 17856.77 | 168 / 170 | 40% | 20.34 | 184 / 459 |
thymus | 79% | 3680.66 | 515 / 653 | 59% | 29.91 | 354 / 605 |
esophagus | 84% | 8020.80 | 1207 / 1445 | 46% | 19.67 | 85 / 183 |
pancreas | 36% | 794.03 | 119 / 328 | 89% | 78.47 | 159 / 178 |
lung | 54% | 1521.08 | 310 / 578 | 64% | 33.50 | 743 / 1155 |
blood vessel | 100% | 29704.79 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 99% | 8808.45 | 1187 / 1204 | 0% | 0 | 0 / 0 |
heart | 79% | 3621.38 | 678 / 861 | 0% | 0 | 0 / 0 |
skin | 54% | 2035.66 | 977 / 1809 | 25% | 9.79 | 116 / 472 |
kidney | 30% | 713.22 | 27 / 89 | 44% | 20.72 | 396 / 901 |
muscle | 62% | 2252.33 | 499 / 803 | 0% | 0 | 0 / 0 |
adrenal gland | 23% | 534.04 | 59 / 258 | 36% | 14.13 | 82 / 230 |
brain | 10% | 201.13 | 252 / 2642 | 19% | 4.62 | 131 / 705 |
tonsil | 0% | 0 | 0 / 0 | 24% | 5.36 | 11 / 45 |
liver | 2% | 46.92 | 5 / 226 | 22% | 5.12 | 88 / 406 |
lymph node | 0% | 0 | 0 / 0 | 17% | 2.75 | 5 / 29 |
eye | 0% | 0 | 0 / 0 | 14% | 2.28 | 11 / 80 |
spleen | 9% | 248.51 | 22 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0010595 | Biological process | positive regulation of endothelial cell migration |
GO_0045931 | Biological process | positive regulation of mitotic cell cycle |
GO_0030198 | Biological process | extracellular matrix organization |
GO_0045743 | Biological process | positive regulation of fibroblast growth factor receptor signaling pathway |
GO_2000573 | Biological process | positive regulation of DNA biosynthetic process |
GO_2001028 | Biological process | positive regulation of endothelial cell chemotaxis |
GO_1900748 | Biological process | positive regulation of vascular endothelial growth factor signaling pathway |
GO_0045766 | Biological process | positive regulation of angiogenesis |
GO_0035470 | Biological process | positive regulation of vascular wound healing |
GO_0005604 | Cellular component | basement membrane |
GO_0005615 | Cellular component | extracellular space |
GO_0071944 | Cellular component | cell periphery |
GO_0008201 | Molecular function | heparin binding |
GO_0050840 | Molecular function | extracellular matrix binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SMOC2 |
Protein name | SPARC related modular calcium binding 2 SPARC-related modular calcium-binding protein 2 (Secreted modular calcium-binding protein 2) (SMOC-2) (Smooth muscle-associated protein 2) (SMAP-2) |
Synonyms | MSTP117 SMAP2 |
Description | FUNCTION: Promotes matrix assembly and cell adhesiveness (By similarity). Can stimulate endothelial cell proliferation, migration, as well as angiogenesis. . |
Accessions | ENST00000392100.6 H0Y5I1 ENST00000354536.9 [Q9H3U7-2] Q9H3U7 H0Y3J4 ENST00000417208.1 ENST00000356284.7 [Q9H3U7-1] |