Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 23% ± 3% | |
adipocyte | 6 studies | 29% ± 9% | |
epithelial cell | 5 studies | 33% ± 11% | |
hepatocyte | 5 studies | 48% ± 17% | |
macrophage | 5 studies | 25% ± 6% | |
retina horizontal cell | 4 studies | 19% ± 3% | |
retinal cone cell | 4 studies | 20% ± 4% | |
ciliated cell | 4 studies | 27% ± 4% | |
astrocyte | 4 studies | 24% ± 4% | |
mast cell | 3 studies | 18% ± 1% | |
non-classical monocyte | 3 studies | 37% ± 16% | |
B cell | 3 studies | 20% ± 3% | |
neuron | 3 studies | 20% ± 5% | |
type I pneumocyte | 3 studies | 17% ± 2% | |
GABAergic neuron | 3 studies | 40% ± 8% | |
glutamatergic neuron | 3 studies | 46% ± 12% | |
basal cell | 3 studies | 27% ± 7% | |
transit amplifying cell | 3 studies | 23% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 12229.99 | 226 / 226 | 100% | 71.25 | 406 / 406 |
thymus | 100% | 10830.09 | 653 / 653 | 100% | 41.93 | 605 / 605 |
uterus | 100% | 3987.56 | 170 / 170 | 100% | 41.55 | 459 / 459 |
esophagus | 100% | 4387.25 | 1444 / 1445 | 100% | 21.13 | 183 / 183 |
brain | 99% | 5608.07 | 2628 / 2642 | 100% | 40.32 | 705 / 705 |
kidney | 100% | 5790.58 | 89 / 89 | 99% | 30.40 | 896 / 901 |
intestine | 100% | 4326.18 | 966 / 966 | 99% | 26.91 | 524 / 527 |
skin | 100% | 5621.84 | 1809 / 1809 | 99% | 38.41 | 469 / 472 |
ovary | 100% | 2798.64 | 180 / 180 | 99% | 22.99 | 427 / 430 |
breast | 100% | 7327.53 | 459 / 459 | 99% | 29.74 | 1110 / 1118 |
prostate | 100% | 4635.35 | 244 / 245 | 99% | 33.33 | 499 / 502 |
stomach | 100% | 2683.03 | 359 / 359 | 99% | 24.07 | 283 / 286 |
lung | 100% | 4987.87 | 576 / 578 | 99% | 28.86 | 1144 / 1155 |
bladder | 100% | 3638.71 | 21 / 21 | 98% | 32.11 | 495 / 504 |
adrenal gland | 100% | 2979.69 | 257 / 258 | 97% | 26.36 | 223 / 230 |
pancreas | 96% | 2266.91 | 316 / 328 | 99% | 30.71 | 177 / 178 |
adipose | 100% | 7694.37 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 95.70 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 51.60 | 29 / 29 |
spleen | 100% | 4370.95 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 38.59 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 30.28 | 1 / 1 |
muscle | 100% | 6646.24 | 801 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 3455.00 | 1328 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 5125.18 | 919 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 2559.37 | 839 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042147 | Biological process | retrograde transport, endosome to Golgi |
GO_0045332 | Biological process | phospholipid translocation |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0005768 | Cellular component | endosome |
GO_0005829 | Cellular component | cytosol |
GO_0016020 | Cellular component | membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | SLC66A2 |
Protein name | Solute carrier family 66 member 2 (PQ-loop repeat-containing protein 1) |
Synonyms | PQLC1 |
Description | |
Accessions | K7ERV4 ENST00000478144.5 Q8N2U9 ENST00000593030.6 ENST00000590381.5 [Q8N2U9-3] ENST00000397778.7 [Q8N2U9-1] K7ERD3 K7EQ76 ENST00000589452.1 ENST00000474967.5 X6R488 ENST00000351365.7 ENST00000591964.5 ENST00000357575.8 [Q8N2U9-2] K7EMG2 |