Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 13 studies | 32% ± 14% | |
astrocyte | 10 studies | 31% ± 15% | |
endothelial cell | 9 studies | 22% ± 8% | |
oligodendrocyte | 8 studies | 26% ± 10% | |
microglial cell | 6 studies | 24% ± 6% | |
retinal cone cell | 5 studies | 21% ± 6% | |
glutamatergic neuron | 4 studies | 37% ± 19% | |
neuron | 4 studies | 26% ± 11% | |
retinal pigment epithelial cell | 4 studies | 32% ± 12% | |
retinal rod cell | 4 studies | 25% ± 6% | |
oligodendrocyte precursor cell | 4 studies | 26% ± 6% | |
epithelial cell | 3 studies | 40% ± 27% | |
type I pneumocyte | 3 studies | 21% ± 5% | |
club cell | 3 studies | 22% ± 4% | |
renal principal cell | 3 studies | 45% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 8727.82 | 245 / 245 | 100% | 23.43 | 501 / 502 |
thymus | 100% | 60468.92 | 653 / 653 | 99% | 106.21 | 601 / 605 |
ovary | 100% | 6614.22 | 180 / 180 | 99% | 35.28 | 427 / 430 |
brain | 99% | 5217.94 | 2621 / 2642 | 99% | 21.63 | 697 / 705 |
breast | 100% | 5183.46 | 458 / 459 | 96% | 22.73 | 1071 / 1118 |
uterus | 100% | 5440.52 | 170 / 170 | 90% | 16.57 | 412 / 459 |
esophagus | 100% | 3666.52 | 1442 / 1445 | 90% | 13.68 | 164 / 183 |
lung | 100% | 5823.22 | 578 / 578 | 86% | 13.61 | 996 / 1155 |
stomach | 99% | 2688.25 | 357 / 359 | 85% | 9.69 | 244 / 286 |
bladder | 100% | 3522.05 | 21 / 21 | 85% | 11.72 | 426 / 504 |
intestine | 97% | 2381.52 | 941 / 966 | 85% | 10.20 | 450 / 527 |
adrenal gland | 100% | 4631.90 | 258 / 258 | 74% | 8.28 | 171 / 230 |
pancreas | 82% | 1590.17 | 269 / 328 | 92% | 15.61 | 163 / 178 |
kidney | 100% | 10920.40 | 89 / 89 | 72% | 9.78 | 648 / 901 |
skin | 90% | 3521.05 | 1626 / 1809 | 81% | 8.67 | 380 / 472 |
liver | 93% | 2080.13 | 211 / 226 | 48% | 4.96 | 196 / 406 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.02 | 1 / 1 |
spleen | 100% | 2331.85 | 240 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 2789.57 | 1319 / 1335 | 0% | 0 | 0 / 0 |
adipose | 98% | 3267.60 | 1184 / 1204 | 0% | 0 | 0 / 0 |
heart | 94% | 2160.79 | 807 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 80% | 9.60 | 36 / 45 |
peripheral blood | 70% | 1455.21 | 647 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 54% | 5.86 | 43 / 80 |
lymph node | 0% | 0 | 0 / 0 | 48% | 3.90 | 14 / 29 |
muscle | 41% | 540.52 | 326 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0089709 | Biological process | L-histidine transmembrane transport |
GO_0006865 | Biological process | amino acid transport |
GO_1902616 | Biological process | acyl carnitine transmembrane transport |
GO_1903826 | Biological process | L-arginine transmembrane transport |
GO_1990575 | Biological process | mitochondrial L-ornithine transmembrane transport |
GO_1903401 | Biological process | L-lysine transmembrane transport |
GO_0015822 | Biological process | ornithine transport |
GO_0015879 | Biological process | carnitine transport |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005289 | Molecular function | high-affinity L-arginine transmembrane transporter activity |
GO_0015227 | Molecular function | acyl carnitine transmembrane transporter activity |
GO_0005292 | Molecular function | high-affinity lysine transmembrane transporter activity |
GO_0015174 | Molecular function | basic amino acid transmembrane transporter activity |
Gene name | SLC25A29 |
Protein name | Solute carrier family 25 member 29 Mitochondrial basic amino acids transporter (Carnitine/acylcarnitine translocase-like) (CACT-like) (Mitochondrial carnitine/acylcarnitine carrier protein CACL) (Mitochondrial ornithine transporter 3) (Solute carrier family 25 member 29) |
Synonyms | ORNT3 C14orf69 |
Description | FUNCTION: Mitochondrial transporter of arginine, lysine, homoarginine, methylarginine and, to a much lesser extent, ornithine and histidine . Does not transport carnitine nor acylcarnitines . Functions by both counter-exchange and uniport mechanisms . Plays a physiological role in the import of basic amino acids into mitochondria for mitochondrial protein synthesis and amino acid degradation . . |
Accessions | ENST00000554912.1 [Q8N8R3-3] ENST00000556505.5 [Q8N8R3-3] ENST00000359232.8 [Q8N8R3-1] G3V4H8 ENST00000392908.7 [Q8N8R3-2] ENST00000554224.5 G3V5F4 G3V441 ENST00000556868.1 ENST00000555927.5 [Q8N8R3-3] G3V477 Q8N8R3 ENST00000554291.5 ENST00000556715.6 ENST00000554060.1 |