SHISA3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
fibroblast	4 studies	30% ± 8%	Explore
connective tissue cell	3 studies	36% ± 6%	Explore

II. Expression across tissues

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
kidney	100%	1832.13	89 / 89	87%	23.17	787 / 901
thymus	92%	508.25	603 / 653	58%	3.79	352 / 605
lung	94%	515.39	541 / 578	55%	19.87	637 / 1155
intestine	82%	585.33	789 / 966	47%	2.31	249 / 527
adrenal gland	60%	133.99	154 / 258	60%	5.58	138 / 230
esophagus	71%	822.95	1027 / 1445	34%	1.53	63 / 183
stomach	48%	206.33	173 / 359	51%	5.30	145 / 286
heart	97%	772.73	837 / 861	0%	0	0 / 0
bladder	71%	311.52	15 / 21	23%	2.28	118 / 504
adipose	90%	309.74	1089 / 1204	0%	0	0 / 0
blood vessel	77%	420.41	1027 / 1335	0%	0	0 / 0
brain	23%	71.67	605 / 2642	53%	1.69	376 / 705
breast	63%	191.51	291 / 459	10%	1.20	110 / 1118
lymph node	0%	0	0 / 0	69%	13.38	20 / 29
pancreas	0%	0.35	1 / 328	49%	1.56	88 / 178
liver	3%	6.38	7 / 226	40%	1.97	164 / 406
prostate	18%	64.07	45 / 245	21%	0.60	103 / 502
skin	9%	13.38	161 / 1809	24%	2.01	112 / 472
uterus	9%	13.27	15 / 170	21%	6.24	98 / 459
muscle	29%	55.67	230 / 803	0%	0	0 / 0
ovary	6%	22.88	11 / 180	18%	1.72	78 / 430
tonsil	0%	0	0 / 0	11%	0.61	5 / 45
peripheral blood	5%	15.24	48 / 929	0%	0	0 / 0
spleen	4%	6.18	9 / 241	0%	0	0 / 0
eye	0%	0	0 / 0	1%	0.02	1 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1