SFTA3 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
type I pneumocyte	12 studies	62% ± 15%	Explore
type II pneumocyte	11 studies	78% ± 9%	Explore
ciliated cell	7 studies	25% ± 11%	Explore
epithelial cell	6 studies	38% ± 30%	Explore
club cell	6 studies	54% ± 19%	Explore
basal cell	5 studies	39% ± 16%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	4 studies	32% ± 9%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	9355.98	652 / 653	84%	66.11	508 / 605
lung	99%	5833.44	575 / 578	45%	22.92	524 / 1155
bladder	0%	0	0 / 21	5%	1.99	24 / 504
brain	3%	17.65	90 / 2642	0%	0	0 / 705
uterus	0%	0	0 / 170	1%	0.10	5 / 459
ovary	1%	10.33	1 / 180	0%	0.05	1 / 430
stomach	0%	0	0 / 359	1%	0.07	2 / 286
skin	0%	0.28	1 / 1809	0%	0.04	2 / 472
pancreas	0%	2.34	1 / 328	0%	0	0 / 178
prostate	0%	0	0 / 245	0%	0.02	1 / 502
blood vessel	0%	0.69	2 / 1335	0%	0	0 / 0
peripheral blood	0%	0.47	1 / 929	0%	0	0 / 0
breast	0%	0	0 / 459	0%	0.01	1 / 1118
abdomen	0%	0	0 / 0	0%	0	0 / 0
adipose	0%	0	0 / 1204	0%	0	0 / 0
adrenal gland	0%	0	0 / 258	0%	0	0 / 230
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
esophagus	0%	0	0 / 1445	0%	0	0 / 183
eye	0%	0	0 / 0	0%	0	0 / 80
gingiva	0%	0	0 / 0	0%	0	0 / 0
heart	0%	0	0 / 861	0%	0	0 / 0
intestine	0%	0	0 / 966	0%	0	0 / 527
kidney	0%	0	0 / 89	0%	0	0 / 901
liver	0%	0	0 / 226	0%	0	0 / 406
lymph node	0%	0	0 / 0	0%	0	0 / 29
muscle	0%	0	0 / 803	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	0%	0	0 / 45
ureter	0%	0	0 / 0	0%	0	0 / 1