Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasma cell | 7 studies | 34% ± 15% | |
endothelial cell | 7 studies | 24% ± 6% | |
epithelial cell | 5 studies | 35% ± 13% | |
astrocyte | 4 studies | 23% ± 5% | |
glutamatergic neuron | 4 studies | 43% ± 16% | |
fibroblast | 4 studies | 23% ± 5% | |
GABAergic neuron | 3 studies | 41% ± 7% | |
oligodendrocyte precursor cell | 3 studies | 24% ± 6% | |
macrophage | 3 studies | 18% ± 3% | |
goblet cell | 3 studies | 34% ± 24% | |
oligodendrocyte | 3 studies | 19% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 36% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1853.06 | 1445 / 1445 | 100% | 29.84 | 183 / 183 |
lung | 100% | 2058.37 | 576 / 578 | 100% | 22.25 | 1155 / 1155 |
ovary | 100% | 1530.51 | 180 / 180 | 100% | 12.27 | 428 / 430 |
breast | 100% | 2011.17 | 459 / 459 | 99% | 25.03 | 1109 / 1118 |
intestine | 100% | 1940.18 | 966 / 966 | 98% | 20.01 | 518 / 527 |
stomach | 100% | 2071.00 | 359 / 359 | 98% | 24.28 | 281 / 286 |
liver | 100% | 3143.66 | 226 / 226 | 98% | 19.37 | 398 / 406 |
prostate | 100% | 1749.42 | 244 / 245 | 98% | 21.39 | 491 / 502 |
thymus | 100% | 2147.25 | 653 / 653 | 97% | 16.59 | 589 / 605 |
pancreas | 100% | 1676.38 | 328 / 328 | 97% | 18.00 | 173 / 178 |
uterus | 100% | 1820.94 | 170 / 170 | 97% | 15.10 | 445 / 459 |
bladder | 100% | 1701.67 | 21 / 21 | 96% | 14.79 | 483 / 504 |
adrenal gland | 100% | 3028.59 | 258 / 258 | 94% | 14.06 | 217 / 230 |
kidney | 100% | 1253.33 | 89 / 89 | 94% | 18.55 | 850 / 901 |
skin | 100% | 2492.30 | 1806 / 1809 | 94% | 18.42 | 443 / 472 |
brain | 91% | 720.07 | 2401 / 2642 | 99% | 15.08 | 699 / 705 |
adipose | 100% | 2216.87 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2313.99 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 2220.00 | 241 / 241 | 0% | 0 | 0 / 0 |
muscle | 100% | 2020.83 | 801 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 15.93 | 44 / 45 |
heart | 94% | 1023.46 | 809 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 13.88 | 27 / 29 |
peripheral blood | 93% | 2716.45 | 864 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 56% | 5.35 | 45 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0050714 | Biological process | positive regulation of protein secretion |
GO_0006886 | Biological process | intracellular protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0032374 | Biological process | regulation of cholesterol transport |
GO_0042632 | Biological process | cholesterol homeostasis |
GO_0090110 | Biological process | COPII-coated vesicle cargo loading |
GO_0012507 | Cellular component | ER to Golgi transport vesicle membrane |
GO_0005829 | Cellular component | cytosol |
GO_0030127 | Cellular component | COPII vesicle coat |
GO_0070971 | Cellular component | endoplasmic reticulum exit site |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0000149 | Molecular function | SNARE binding |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | SEC24A |
Protein name | SEC24 homolog A, COPII coat complex component Protein transport protein Sec24A (SEC24-related protein A) |
Synonyms | |
Description | FUNCTION: Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules for their transport to the Golgi complex . Plays a central role in cargo selection within the COPII complex and together with SEC24B may have a different specificity compared to SEC24C and SEC24D. May package preferentially cargos with cytoplasmic DxE or LxxLE motifs and may also recognize conformational epitopes . . |
Accessions | ENST00000322887.8 [O95486-2] ENST00000513123.1 ENST00000398844.7 [O95486-1] H0Y9J6 O95486 |