Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| macrophage | 12 studies | 26% ± 9% | |
| oligodendrocyte precursor cell | 12 studies | 44% ± 17% | |
| astrocyte | 11 studies | 24% ± 7% | |
| endothelial cell | 5 studies | 29% ± 14% | |
| neuron | 5 studies | 22% ± 7% | |
| GABAergic neuron | 4 studies | 25% ± 4% | |
| glutamatergic neuron | 4 studies | 29% ± 7% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 7 studies | 24% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 100% | 16605.46 | 2636 / 2642 | 100% | 420.71 | 704 / 705 |
| breast | 99% | 5907.04 | 456 / 459 | 93% | 60.79 | 1039 / 1118 |
| prostate | 99% | 8946.49 | 243 / 245 | 88% | 43.01 | 442 / 502 |
| adrenal gland | 100% | 29096.22 | 258 / 258 | 86% | 101.02 | 198 / 230 |
| lung | 99% | 6317.17 | 575 / 578 | 80% | 47.13 | 929 / 1155 |
| thymus | 93% | 3230.21 | 606 / 653 | 85% | 60.02 | 517 / 605 |
| skin | 68% | 2767.68 | 1238 / 1809 | 100% | 396.97 | 472 / 472 |
| uterus | 94% | 12156.69 | 160 / 170 | 74% | 48.51 | 339 / 459 |
| intestine | 93% | 11339.07 | 896 / 966 | 75% | 34.53 | 393 / 527 |
| bladder | 100% | 10397.14 | 21 / 21 | 64% | 33.09 | 325 / 504 |
| kidney | 70% | 2506.91 | 62 / 89 | 80% | 48.49 | 722 / 901 |
| stomach | 69% | 4973.42 | 247 / 359 | 76% | 43.08 | 218 / 286 |
| esophagus | 74% | 6829.68 | 1074 / 1445 | 70% | 31.14 | 129 / 183 |
| ovary | 52% | 2365.27 | 93 / 180 | 91% | 68.28 | 393 / 430 |
| spleen | 100% | 17169.05 | 241 / 241 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 99% | 113.59 | 79 / 80 |
| adipose | 99% | 5139.42 | 1186 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 97% | 6228.53 | 1296 / 1335 | 0% | 0 | 0 / 0 |
| pancreas | 11% | 296.44 | 36 / 328 | 85% | 40.83 | 152 / 178 |
| heart | 86% | 3761.92 | 743 / 861 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 86% | 52.80 | 25 / 29 |
| tonsil | 0% | 0 | 0 / 0 | 56% | 21.21 | 25 / 45 |
| liver | 20% | 663.63 | 46 / 226 | 32% | 14.53 | 128 / 406 |
| peripheral blood | 2% | 46.14 | 15 / 929 | 0% | 0 | 0 / 0 |
| muscle | 1% | 19.88 | 7 / 803 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0016477 | Biological process | cell migration |
| GO_0044393 | Cellular component | microspike |
| GO_0005796 | Cellular component | Golgi lumen |
| GO_0009986 | Cellular component | cell surface |
| GO_0043202 | Cellular component | lysosomal lumen |
| GO_0062023 | Cellular component | collagen-containing extracellular matrix |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0016020 | Cellular component | membrane |
| GO_0042802 | Molecular function | identical protein binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | SDC3 |
| Protein name | Syndecan Alternative protein SDC3 Syndecan-3 (SYND3) |
| Synonyms | KIAA0468 hCG_15913 |
| Description | FUNCTION: Cell surface proteoglycan. . FUNCTION: Cell surface proteoglycan that may bear heparan sulfate (By similarity). May have a role in the organization of cell shape by affecting the actin cytoskeleton, possibly by transferring signals from the cell surface in a sugar-dependent mechanism. . FUNCTION: Cell surface proteoglycan. . |
| Accessions | ENST00000336798.11 O75056 ENST00000339394.7 A0A0S2Z4U3 L8E9N4 A0A9K3Y886 |
