Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 42 studies | 37% ± 16% | |
smooth muscle cell | 28 studies | 33% ± 13% | |
pericyte | 24 studies | 49% ± 22% | |
connective tissue cell | 17 studies | 43% ± 17% | |
astrocyte | 13 studies | 32% ± 15% | |
myofibroblast cell | 13 studies | 42% ± 18% | |
macrophage | 10 studies | 29% ± 16% | |
adipocyte | 9 studies | 30% ± 9% | |
renal alpha-intercalated cell | 7 studies | 45% ± 15% | |
retinal cone cell | 6 studies | 30% ± 12% | |
renal beta-intercalated cell | 5 studies | 61% ± 21% | |
endothelial cell | 5 studies | 25% ± 5% | |
myeloid cell | 5 studies | 28% ± 14% | |
hepatocyte | 5 studies | 48% ± 21% | |
pancreatic A cell | 4 studies | 48% ± 20% | |
podocyte | 4 studies | 49% ± 23% | |
progenitor cell | 4 studies | 37% ± 16% | |
retinal pigment epithelial cell | 4 studies | 36% ± 17% | |
type B pancreatic cell | 3 studies | 38% ± 15% | |
parietal epithelial cell | 3 studies | 29% ± 10% | |
epithelial cell | 3 studies | 40% ± 12% | |
mesothelial cell | 3 studies | 46% ± 13% | |
abnormal cell | 3 studies | 40% ± 22% | |
kidney loop of Henle epithelial cell | 3 studies | 23% ± 4% | |
muscle cell | 3 studies | 35% ± 24% | |
GABAergic neuron | 3 studies | 30% ± 12% | |
ependymal cell | 3 studies | 31% ± 16% | |
glutamatergic neuron | 3 studies | 26% ± 10% | |
neuron | 3 studies | 48% ± 24% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 10209.08 | 226 / 226 | 97% | 274.84 | 395 / 406 |
kidney | 99% | 4827.16 | 88 / 89 | 95% | 136.85 | 855 / 901 |
breast | 100% | 7480.57 | 459 / 459 | 91% | 105.38 | 1014 / 1118 |
prostate | 98% | 5363.11 | 241 / 245 | 91% | 73.65 | 456 / 502 |
thymus | 100% | 23359.06 | 652 / 653 | 89% | 301.44 | 536 / 605 |
pancreas | 95% | 3296.75 | 312 / 328 | 88% | 53.31 | 157 / 178 |
brain | 89% | 3749.33 | 2349 / 2642 | 76% | 50.19 | 539 / 705 |
lung | 99% | 5118.57 | 570 / 578 | 66% | 42.89 | 766 / 1155 |
bladder | 100% | 9909.71 | 21 / 21 | 53% | 28.59 | 266 / 504 |
ovary | 100% | 15674.23 | 180 / 180 | 51% | 29.09 | 218 / 430 |
uterus | 99% | 8846.82 | 169 / 170 | 49% | 57.30 | 224 / 459 |
stomach | 89% | 4130.89 | 321 / 359 | 58% | 30.24 | 166 / 286 |
intestine | 97% | 6956.09 | 935 / 966 | 50% | 25.37 | 262 / 527 |
skin | 83% | 3635.24 | 1509 / 1809 | 59% | 71.25 | 279 / 472 |
esophagus | 77% | 4335.22 | 1110 / 1445 | 45% | 24.84 | 82 / 183 |
adrenal gland | 30% | 857.37 | 77 / 258 | 84% | 108.83 | 193 / 230 |
adipose | 100% | 8931.60 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 16640.06 | 1335 / 1335 | 0% | 0 | 0 / 0 |
heart | 91% | 4225.61 | 786 / 861 | 0% | 0 | 0 / 0 |
spleen | 54% | 1215.41 | 129 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 33% | 22.34 | 15 / 45 |
muscle | 21% | 495.29 | 170 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 15% | 5.66 | 12 / 80 |
lymph node | 0% | 0 | 0 / 0 | 3% | 1.34 | 1 / 29 |
peripheral blood | 2% | 58.80 | 23 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0016477 | Biological process | cell migration |
GO_0008150 | Biological process | biological_process |
GO_0048814 | Biological process | regulation of dendrite morphogenesis |
GO_0048813 | Biological process | dendrite morphogenesis |
GO_0005796 | Cellular component | Golgi lumen |
GO_0009986 | Cellular component | cell surface |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005886 | Cellular component | plasma membrane |
GO_0030165 | Molecular function | PDZ domain binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SDC2 |
Protein name | Syndecan-2 (SYND2) (Fibroglycan) (Heparan sulfate proteoglycan core protein) (HSPG) (CD antigen CD362) Syndecan 2 Syndecan |
Synonyms | HSPG1 |
Description | FUNCTION: Cell surface proteoglycan which regulates dendritic arbor morphogenesis. . FUNCTION: Cell surface proteoglycan. . FUNCTION: Cell surface proteoglycan. . |
Accessions | ENST00000519914.5 E9PBI9 ENST00000521590.5 E5RHU3 ENST00000518385.5 E7ESK6 ENST00000302190.9 ENST00000523877.1 ENST00000522911.5 P34741 E5RJB8 |