SCGN report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
enteroendocrine cell	6 studies	63% ± 26%	Explore
pancreatic A cell	4 studies	77% ± 11%	Explore
type B pancreatic cell	4 studies	83% ± 8%	Explore
neuroendocrine cell	4 studies	66% ± 8%	Explore
pancreatic D cell	3 studies	81% ± 8%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
pancreas	4 studies	55% ± 17%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
pancreas	100%	1995.95	328 / 328	75%	107.52	133 / 178
intestine	98%	834.73	947 / 966	13%	5.39	67 / 527
prostate	28%	57.18	69 / 245	74%	21.60	370 / 502
kidney	26%	53.24	23 / 89	72%	73.97	649 / 901
stomach	82%	202.85	295 / 359	12%	6.60	33 / 286
liver	26%	40.77	58 / 226	58%	32.06	234 / 406
heart	64%	357.11	555 / 861	0%	0	0 / 0
adrenal gland	36%	81.45	94 / 258	28%	16.23	64 / 230
adipose	53%	204.09	636 / 1204	0%	0	0 / 0
brain	38%	696.07	992 / 2642	13%	3.25	94 / 705
breast	35%	132.49	161 / 459	13%	7.53	149 / 1118
thymus	29%	84.16	189 / 653	5%	0.37	28 / 605
esophagus	22%	44.92	318 / 1445	5%	3.20	9 / 183
blood vessel	12%	25.90	163 / 1335	0%	0	0 / 0
ovary	4%	7.12	8 / 180	1%	0.12	3 / 430
lung	1%	2.15	4 / 578	4%	1.61	45 / 1155
bladder	0%	0	0 / 21	4%	3.73	18 / 504
uterus	0%	0	0 / 170	2%	0.21	11 / 459
tonsil	0%	0	0 / 0	2%	16.51	1 / 45
skin	0%	1.21	7 / 1809	1%	0.07	5 / 472
eye	0%	0	0 / 0	1%	0.08	1 / 80
muscle	0%	0.49	1 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
lymph node	0%	0	0 / 0	0%	0	0 / 29
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
peripheral blood	0%	0	0 / 929	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
spleen	0%	0	0 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1