Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 14 studies | 34% ± 14% | |
epithelial cell | 11 studies | 37% ± 20% | |
macrophage | 7 studies | 24% ± 7% | |
astrocyte | 7 studies | 34% ± 26% | |
endothelial cell | 6 studies | 23% ± 8% | |
fibroblast | 6 studies | 19% ± 5% | |
neuron | 6 studies | 35% ± 12% | |
oligodendrocyte precursor cell | 6 studies | 28% ± 7% | |
hematopoietic precursor cell | 5 studies | 33% ± 12% | |
oligodendrocyte | 5 studies | 26% ± 8% | |
erythroblast | 5 studies | 26% ± 11% | |
alveolar macrophage | 5 studies | 21% ± 3% | |
abnormal cell | 5 studies | 28% ± 7% | |
glutamatergic neuron | 5 studies | 35% ± 14% | |
myofibroblast cell | 4 studies | 17% ± 1% | |
glial cell | 4 studies | 35% ± 19% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 24% ± 8% | |
hepatocyte | 4 studies | 36% ± 18% | |
secretory cell | 4 studies | 25% ± 8% | |
pericyte | 3 studies | 20% ± 6% | |
smooth muscle cell | 3 studies | 16% ± 1% | |
club cell | 3 studies | 16% ± 1% | |
GABAergic neuron | 3 studies | 33% ± 6% | |
enteroendocrine cell | 3 studies | 26% ± 12% | |
intestinal crypt stem cell | 3 studies | 24% ± 1% | |
basal cell | 3 studies | 33% ± 12% | |
Schwann cell | 3 studies | 37% ± 15% | |
natural killer cell | 3 studies | 22% ± 2% | |
interneuron | 3 studies | 30% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 3016.55 | 245 / 245 | 100% | 174.87 | 502 / 502 |
brain | 100% | 3420.80 | 2639 / 2642 | 100% | 133.42 | 704 / 705 |
thymus | 100% | 2491.62 | 651 / 653 | 99% | 92.00 | 598 / 605 |
liver | 100% | 5932.66 | 226 / 226 | 99% | 264.67 | 400 / 406 |
stomach | 100% | 1907.18 | 359 / 359 | 98% | 79.06 | 280 / 286 |
ovary | 100% | 1958.92 | 180 / 180 | 98% | 63.16 | 420 / 430 |
intestine | 100% | 2801.94 | 965 / 966 | 97% | 92.86 | 511 / 527 |
bladder | 100% | 4141.52 | 21 / 21 | 96% | 184.77 | 486 / 504 |
kidney | 100% | 2550.52 | 89 / 89 | 96% | 85.43 | 866 / 901 |
breast | 99% | 2150.22 | 456 / 459 | 96% | 196.29 | 1077 / 1118 |
pancreas | 96% | 1160.27 | 316 / 328 | 98% | 124.90 | 175 / 178 |
lung | 98% | 1733.00 | 568 / 578 | 96% | 85.43 | 1111 / 1155 |
adrenal gland | 100% | 5862.87 | 258 / 258 | 88% | 66.02 | 202 / 230 |
skin | 99% | 2092.01 | 1790 / 1809 | 86% | 133.37 | 404 / 472 |
uterus | 99% | 1914.08 | 168 / 170 | 81% | 96.87 | 374 / 459 |
esophagus | 74% | 1394.64 | 1069 / 1445 | 70% | 44.22 | 128 / 183 |
adipose | 100% | 2786.81 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 3085.53 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 281.04 | 1 / 1 |
blood vessel | 100% | 1906.35 | 1330 / 1335 | 0% | 0 | 0 / 0 |
spleen | 96% | 1041.12 | 232 / 241 | 0% | 0 | 0 / 0 |
heart | 95% | 1917.02 | 814 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 53.75 | 27 / 29 |
tonsil | 0% | 0 | 0 / 0 | 58% | 31.81 | 26 / 45 |
peripheral blood | 47% | 780.89 | 436 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 36% | 15.25 | 29 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0009247 | Biological process | glycolipid biosynthetic process |
GO_0030496 | Cellular component | midbody |
GO_0031093 | Cellular component | platelet alpha granule lumen |
GO_0005576 | Cellular component | extracellular region |
GO_0005811 | Cellular component | lipid droplet |
GO_0016020 | Cellular component | membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005634 | Cellular component | nucleus |
GO_0016491 | Molecular function | oxidoreductase activity |
Gene name | SCCPDH |
Protein name | Saccharopine dehydrogenase-like oxidoreductase Saccharopine dehydrogenase-like oxidoreductase (EC 1.-.-.-) |
Synonyms | hCG_1782151 CGI-49 |
Description | |
Accessions | Q8NBX0 A0A384NPM7 ENST00000366510.4 |