Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasmacytoid dendritic cell | 12 studies | 27% ± 5% | |
glutamatergic neuron | 10 studies | 48% ± 21% | |
GABAergic neuron | 9 studies | 47% ± 23% | |
retinal rod cell | 7 studies | 40% ± 13% | |
amacrine cell | 6 studies | 28% ± 9% | |
retinal cone cell | 6 studies | 40% ± 11% | |
oligodendrocyte precursor cell | 6 studies | 27% ± 6% | |
neuron | 5 studies | 36% ± 8% | |
interneuron | 5 studies | 48% ± 22% | |
retinal bipolar neuron | 4 studies | 25% ± 6% | |
retinal ganglion cell | 4 studies | 44% ± 16% | |
retina horizontal cell | 4 studies | 23% ± 4% | |
oligodendrocyte | 4 studies | 22% ± 4% | |
GABAergic interneuron | 3 studies | 30% ± 9% | |
OFF-bipolar cell | 3 studies | 24% ± 1% | |
ON-bipolar cell | 3 studies | 25% ± 1% | |
rod bipolar cell | 3 studies | 33% ± 2% | |
granule cell | 3 studies | 25% ± 4% | |
astrocyte | 3 studies | 22% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 18553.80 | 2637 / 2642 | 100% | 156.17 | 705 / 705 |
adrenal gland | 87% | 2263.20 | 224 / 258 | 98% | 124.46 | 226 / 230 |
pancreas | 100% | 4639.92 | 327 / 328 | 84% | 25.61 | 150 / 178 |
kidney | 78% | 1903.21 | 69 / 89 | 89% | 22.48 | 802 / 901 |
thymus | 24% | 414.20 | 154 / 653 | 94% | 16.61 | 569 / 605 |
stomach | 53% | 1218.49 | 189 / 359 | 60% | 13.03 | 171 / 286 |
prostate | 11% | 204.50 | 28 / 245 | 90% | 18.02 | 450 / 502 |
ovary | 14% | 274.63 | 25 / 180 | 81% | 14.83 | 350 / 430 |
breast | 3% | 58.04 | 16 / 459 | 85% | 18.16 | 952 / 1118 |
skin | 1% | 22.35 | 25 / 1809 | 77% | 16.93 | 365 / 472 |
lymph node | 0% | 0 | 0 / 0 | 76% | 16.18 | 22 / 29 |
lung | 1% | 23.08 | 7 / 578 | 73% | 13.28 | 844 / 1155 |
intestine | 14% | 327.52 | 137 / 966 | 48% | 9.58 | 255 / 527 |
bladder | 5% | 114.62 | 1 / 21 | 57% | 11.39 | 288 / 504 |
tonsil | 0% | 0 | 0 / 0 | 60% | 10.09 | 27 / 45 |
uterus | 4% | 68.74 | 6 / 170 | 54% | 10.42 | 250 / 459 |
liver | 3% | 55.67 | 6 / 226 | 52% | 11.78 | 210 / 406 |
esophagus | 2% | 36.46 | 28 / 1445 | 48% | 8.81 | 88 / 183 |
spleen | 43% | 790.08 | 103 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 41% | 10.29 | 33 / 80 |
peripheral blood | 4% | 77.25 | 34 / 929 | 0% | 0 | 0 / 0 |
heart | 2% | 40.58 | 20 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 2% | 46.19 | 27 / 1335 | 0% | 0 | 0 / 0 |
adipose | 2% | 37.09 | 24 / 1204 | 0% | 0 | 0 / 0 |
muscle | 0% | 1.61 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0045806 | Biological process | negative regulation of endocytosis |
GO_0015031 | Biological process | protein transport |
GO_0045956 | Biological process | positive regulation of calcium ion-dependent exocytosis |
GO_0001819 | Biological process | positive regulation of cytokine production |
GO_0006887 | Biological process | exocytosis |
GO_0034976 | Biological process | response to endoplasmic reticulum stress |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SCAMP5 |
Protein name | Secretory carrier-associated membrane protein (Secretory carrier membrane protein) Secretory carrier-associated membrane protein 5 (Secretory carrier membrane protein 5) (hSCAMP5) |
Synonyms | |
Description | FUNCTION: Required for the calcium-dependent exocytosis of signal sequence-containing cytokines such as CCL5. Probably acts in cooperation with the SNARE machinery. May play a role in accumulation of expanded polyglutamine (polyQ) protein huntingtin (HTT) in case of endoplasmic reticulum stress by inhibiting the endocytosis pathway. . |
Accessions | ENST00000566872.5 H3BNH7 ENST00000564779.5 ENST00000562765.5 ENST00000565989.5 A0A0A8K8F5 ENST00000568018.5 H3BNW6 ENST00000562327.5 H3BS22 ENST00000568423.5 H3BMY4 ENST00000361900.10 [Q8TAC9-1] H3BP89 ENST00000567529.1 H3BNB3 H3BU33 H3BTD1 H3BT30 ENST00000564491.5 ENST00000562212.5 [Q8TAC9-2] ENST00000568119.5 ENST00000568081.1 ENST00000567920.5 Q8TAC9 ENST00000425597.8 [Q8TAC9-1] |