I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| neuron | 3 studies | 22% ± 7% | |
| endothelial cell | 3 studies | 17% ± 3% | |
| epithelial cell | 3 studies | 31% ± 5% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| neuron | 3 studies | 22% ± 7% | |
| endothelial cell | 3 studies | 17% ± 3% | |
| epithelial cell | 3 studies | 31% ± 5% |
Insufficient scRNA-seq data for expression of SCAF1 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 5181.68 | 1445 / 1445 | 100% | 112.32 | 183 / 183 |
| ovary | 100% | 5445.52 | 180 / 180 | 100% | 111.04 | 430 / 430 |
| thymus | 100% | 5309.94 | 653 / 653 | 100% | 75.88 | 605 / 605 |
| uterus | 100% | 6227.25 | 170 / 170 | 100% | 86.19 | 458 / 459 |
| liver | 100% | 2780.62 | 226 / 226 | 100% | 49.85 | 405 / 406 |
| brain | 100% | 6301.53 | 2641 / 2642 | 100% | 80.28 | 703 / 705 |
| skin | 100% | 5394.88 | 1809 / 1809 | 100% | 87.87 | 470 / 472 |
| adrenal gland | 100% | 4301.80 | 258 / 258 | 100% | 84.89 | 229 / 230 |
| prostate | 100% | 5683.11 | 245 / 245 | 99% | 82.97 | 498 / 502 |
| pancreas | 100% | 2405.35 | 327 / 328 | 99% | 68.33 | 177 / 178 |
| intestine | 100% | 5158.48 | 966 / 966 | 99% | 69.58 | 522 / 527 |
| stomach | 100% | 3651.14 | 359 / 359 | 99% | 77.16 | 283 / 286 |
| kidney | 100% | 3900.28 | 89 / 89 | 99% | 50.35 | 889 / 901 |
| breast | 100% | 4993.27 | 459 / 459 | 99% | 68.85 | 1103 / 1118 |
| bladder | 100% | 5550.62 | 21 / 21 | 98% | 77.24 | 493 / 504 |
| lung | 100% | 4428.43 | 577 / 578 | 98% | 67.17 | 1129 / 1155 |
| adipose | 100% | 4844.72 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 5584.31 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 100.40 | 80 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 77.19 | 29 / 29 |
| muscle | 100% | 5191.50 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 4720.15 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 79.12 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 72.12 | 1 / 1 |
| heart | 99% | 3382.78 | 852 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 97% | 3030.46 | 897 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0006366 | Biological process | transcription by RNA polymerase II |
| GO_0008380 | Biological process | RNA splicing |
| GO_0006397 | Biological process | mRNA processing |
| GO_0005634 | Cellular component | nucleus |
| GO_0019904 | Molecular function | protein domain specific binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0099122 | Molecular function | RNA polymerase II C-terminal domain binding |
| GO_0003723 | Molecular function | RNA binding |
| Gene name | SCAF1 |
| Protein name | SR-related CTD associated factor 1 transcript variant 3 Splicing factor, arginine/serine-rich 19 (SR-related C-terminal domain-associated factor 1) (SR-related and CTD-associated factor 1) (SR-related-CTD-associated factor) (SCAF) (Serine arginine-rich pre-mRNA splicing factor SR-A1) (SR-A1) SR-related CTD associated factor 1 transcript variant 11 SR-related CTD associated factor 1 transcript variant 13 SR-related CTD associated factor 1 Splicing factor, arginine/serine-rich 19 isoform 8 SR-related CTD associated factor 1 transcript variant 6 SR-related CTD associated factor 1 transcript variant 15 SR-related CTD associated factor 1 transcript variant 4 SCAF1 protein |
| Synonyms | SRA1 SFRS19 |
| Description | FUNCTION: May function in pre-mRNA splicing. . |
| Accessions | A0A2U8BR45 M0R2L3 M0R3G4 ENST00000360565.8 A0A2U8BR36 A0A2U8BR29 A0A2U8BR54 ENST00000598359.5 A0A2U8BR31 ENST00000601038.5 ENST00000595242.3 A0A2U8BR44 Q7Z6I4 Q9H7N4 A0A2U8BR37 M0R232 |
