Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 8 studies | 26% ± 9% | |
epithelial cell | 6 studies | 36% ± 20% | |
natural killer cell | 6 studies | 18% ± 3% | |
hematopoietic precursor cell | 4 studies | 22% ± 6% | |
fibroblast | 4 studies | 21% ± 5% | |
CD4-positive, alpha-beta T cell | 3 studies | 16% ± 0% | |
ciliated cell | 3 studies | 30% ± 9% | |
erythroblast | 3 studies | 34% ± 19% | |
glutamatergic neuron | 3 studies | 30% ± 9% | |
dendritic cell | 3 studies | 34% ± 12% | |
intestinal crypt stem cell | 3 studies | 18% ± 2% | |
plasmacytoid dendritic cell | 3 studies | 20% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 2146.39 | 180 / 180 | 100% | 22.12 | 430 / 430 |
skin | 100% | 2692.03 | 1809 / 1809 | 100% | 51.57 | 472 / 472 |
stomach | 100% | 2449.69 | 359 / 359 | 100% | 22.80 | 286 / 286 |
esophagus | 100% | 1876.36 | 1444 / 1445 | 100% | 18.74 | 183 / 183 |
prostate | 100% | 1681.88 | 245 / 245 | 100% | 25.11 | 501 / 502 |
uterus | 100% | 1832.02 | 170 / 170 | 100% | 27.37 | 458 / 459 |
liver | 100% | 1416.07 | 226 / 226 | 100% | 23.90 | 405 / 406 |
breast | 100% | 2736.49 | 459 / 459 | 100% | 25.54 | 1115 / 1118 |
intestine | 100% | 2175.66 | 966 / 966 | 100% | 24.09 | 525 / 527 |
brain | 100% | 1539.78 | 2631 / 2642 | 100% | 25.35 | 705 / 705 |
kidney | 100% | 2123.51 | 89 / 89 | 99% | 22.21 | 896 / 901 |
pancreas | 99% | 1372.35 | 326 / 328 | 100% | 19.77 | 178 / 178 |
thymus | 100% | 1711.56 | 653 / 653 | 99% | 23.02 | 601 / 605 |
bladder | 100% | 1839.33 | 21 / 21 | 99% | 23.24 | 498 / 504 |
lung | 98% | 1467.58 | 568 / 578 | 100% | 21.97 | 1154 / 1155 |
adrenal gland | 100% | 3631.55 | 258 / 258 | 97% | 20.43 | 223 / 230 |
adipose | 100% | 2691.77 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 57.62 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 33.78 | 29 / 29 |
muscle | 100% | 6085.00 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1882.67 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 28.03 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.40 | 1 / 1 |
blood vessel | 100% | 1657.93 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 2791.55 | 848 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 1356.70 | 809 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0033108 | Biological process | mitochondrial respiratory chain complex assembly |
GO_0007007 | Biological process | inner mitochondrial membrane organization |
GO_0042407 | Biological process | cristae formation |
GO_0045040 | Biological process | protein insertion into mitochondrial outer membrane |
GO_0005741 | Cellular component | mitochondrial outer membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0016020 | Cellular component | membrane |
GO_0001401 | Cellular component | SAM complex |
GO_0005739 | Cellular component | mitochondrion |
GO_0140275 | Cellular component | MIB complex |
GO_0005515 | Molecular function | protein binding |
Gene name | SAMM50 |
Protein name | Sorting and assembly machinery component 50 homolog (Transformation-related gene 3 protein) (TRG-3) |
Synonyms | TRG3 SAM50 CGI-51 |
Description | FUNCTION: Plays a crucial role in the maintenance of the structure of mitochondrial cristae and the proper assembly of the mitochondrial respiratory chain complexes . Required for the assembly of TOMM40 into the TOM complex . . |
Accessions | ENST00000350028.5 Q9Y512 |