Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 24% ± 9% | |
oligodendrocyte | 13 studies | 36% ± 14% | |
astrocyte | 11 studies | 30% ± 14% | |
ciliated cell | 8 studies | 23% ± 10% | |
fibroblast | 8 studies | 22% ± 7% | |
macrophage | 6 studies | 24% ± 5% | |
epithelial cell | 6 studies | 36% ± 17% | |
oligodendrocyte precursor cell | 6 studies | 29% ± 11% | |
microglial cell | 5 studies | 23% ± 5% | |
GABAergic neuron | 5 studies | 35% ± 17% | |
neuron | 4 studies | 30% ± 15% | |
glutamatergic neuron | 4 studies | 44% ± 18% | |
classical monocyte | 3 studies | 25% ± 7% | |
glial cell | 3 studies | 22% ± 4% | |
retinal cone cell | 3 studies | 20% ± 2% | |
lymphocyte | 3 studies | 18% ± 2% | |
melanocyte | 3 studies | 31% ± 6% | |
type I pneumocyte | 3 studies | 20% ± 5% | |
pancreatic A cell | 3 studies | 25% ± 6% | |
abnormal cell | 3 studies | 23% ± 5% | |
monocyte | 3 studies | 16% ± 1% | |
myofibroblast cell | 3 studies | 20% ± 4% | |
pericyte | 3 studies | 23% ± 7% | |
Schwann cell | 3 studies | 35% ± 11% | |
basal cell | 3 studies | 29% ± 9% | |
goblet cell | 3 studies | 30% ± 15% | |
transit amplifying cell | 3 studies | 25% ± 13% | |
interneuron | 3 studies | 36% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 6528.38 | 1445 / 1445 | 100% | 89.17 | 183 / 183 |
intestine | 100% | 5290.76 | 966 / 966 | 100% | 47.12 | 527 / 527 |
prostate | 100% | 5660.37 | 245 / 245 | 100% | 44.37 | 502 / 502 |
skin | 100% | 6386.07 | 1809 / 1809 | 100% | 61.21 | 472 / 472 |
uterus | 100% | 6560.82 | 170 / 170 | 100% | 57.34 | 459 / 459 |
brain | 100% | 4912.10 | 2639 / 2642 | 100% | 56.76 | 705 / 705 |
thymus | 100% | 6034.89 | 653 / 653 | 100% | 45.06 | 604 / 605 |
ovary | 100% | 7612.69 | 180 / 180 | 100% | 90.29 | 429 / 430 |
breast | 100% | 5853.61 | 459 / 459 | 99% | 56.30 | 1112 / 1118 |
stomach | 100% | 4181.42 | 359 / 359 | 99% | 54.04 | 284 / 286 |
kidney | 100% | 3782.29 | 89 / 89 | 99% | 39.63 | 894 / 901 |
bladder | 100% | 5935.86 | 21 / 21 | 99% | 47.56 | 499 / 504 |
lung | 100% | 5710.90 | 577 / 578 | 99% | 59.73 | 1144 / 1155 |
pancreas | 99% | 2553.79 | 325 / 328 | 99% | 50.10 | 176 / 178 |
adrenal gland | 100% | 4862.85 | 258 / 258 | 98% | 44.49 | 225 / 230 |
liver | 100% | 2105.77 | 225 / 226 | 95% | 23.87 | 384 / 406 |
adipose | 100% | 5904.47 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6523.09 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 67.91 | 80 / 80 |
spleen | 100% | 4198.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 48.63 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 25.64 | 1 / 1 |
muscle | 99% | 2847.33 | 795 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 3135.16 | 841 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 96% | 3101.77 | 894 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 19.70 | 27 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0017148 | Biological process | negative regulation of translation |
GO_0000289 | Biological process | nuclear-transcribed mRNA poly(A) tail shortening |
GO_0000932 | Cellular component | P-body |
GO_0005829 | Cellular component | cytosol |
GO_0005634 | Cellular component | nucleus |
GO_0030371 | Molecular function | translation repressor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | SAMD4B |
Protein name | SAMD4B protein Protein Smaug homolog 2 (Smaug 2) (hSmaug2) (Sterile alpha motif domain-containing protein 4B) (SAM domain-containing protein 4B) Sterile alpha motif domain containing 4B |
Synonyms | SMAUG2 |
Description | FUNCTION: Has transcriptional repressor activity. Overexpression inhibits the transcriptional activities of AP-1, p53/TP53 and CDKN1A. . |
Accessions | M0R0X3 M0QZ22 ENST00000600018.1 ENST00000599712.1 ENST00000610417.5 M0QX45 ENST00000598605.1 ENST00000314471.10 M0QY61 M0QZW7 Q8IXP7 ENST00000596368.1 Q5PRF9 ENST00000598913.5 Q66K25 |