Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 13 studies | 38% ± 15% | |
endothelial cell | 12 studies | 28% ± 12% | |
astrocyte | 12 studies | 31% ± 14% | |
glutamatergic neuron | 10 studies | 50% ± 25% | |
oligodendrocyte precursor cell | 9 studies | 30% ± 13% | |
interneuron | 7 studies | 48% ± 22% | |
GABAergic neuron | 7 studies | 54% ± 19% | |
neuron | 6 studies | 38% ± 15% | |
amacrine cell | 6 studies | 27% ± 5% | |
macrophage | 6 studies | 23% ± 6% | |
retinal ganglion cell | 6 studies | 30% ± 17% | |
epithelial cell | 6 studies | 27% ± 10% | |
ciliated cell | 6 studies | 23% ± 7% | |
adipocyte | 5 studies | 25% ± 5% | |
fibroblast | 5 studies | 25% ± 6% | |
granule cell | 4 studies | 24% ± 6% | |
endothelial cell of lymphatic vessel | 4 studies | 26% ± 5% | |
pericyte | 4 studies | 22% ± 4% | |
GABAergic interneuron | 3 studies | 33% ± 4% | |
microglial cell | 3 studies | 28% ± 4% | |
glycinergic amacrine cell | 3 studies | 23% ± 6% | |
retinal rod cell | 3 studies | 19% ± 2% | |
ependymal cell | 3 studies | 40% ± 11% | |
goblet cell | 3 studies | 27% ± 14% | |
smooth muscle cell | 3 studies | 23% ± 0% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 3547.25 | 2642 / 2642 | 100% | 14.77 | 703 / 705 |
esophagus | 100% | 1350.78 | 1445 / 1445 | 99% | 6.45 | 182 / 183 |
breast | 100% | 1713.08 | 459 / 459 | 99% | 8.28 | 1105 / 1118 |
prostate | 100% | 1584.25 | 245 / 245 | 99% | 7.56 | 496 / 502 |
lung | 99% | 1283.63 | 575 / 578 | 99% | 6.48 | 1142 / 1155 |
thymus | 100% | 1584.53 | 653 / 653 | 98% | 7.13 | 595 / 605 |
pancreas | 100% | 821.25 | 327 / 328 | 97% | 6.00 | 173 / 178 |
ovary | 100% | 2300.74 | 180 / 180 | 97% | 5.51 | 416 / 430 |
bladder | 100% | 1690.52 | 21 / 21 | 96% | 5.83 | 484 / 504 |
uterus | 100% | 2044.62 | 170 / 170 | 95% | 5.65 | 436 / 459 |
adrenal gland | 100% | 941.17 | 258 / 258 | 94% | 7.50 | 217 / 230 |
kidney | 100% | 948.88 | 89 / 89 | 92% | 6.25 | 832 / 901 |
intestine | 100% | 1458.79 | 966 / 966 | 92% | 4.41 | 483 / 527 |
stomach | 100% | 1034.44 | 359 / 359 | 91% | 4.67 | 260 / 286 |
skin | 100% | 1558.43 | 1808 / 1809 | 81% | 3.86 | 384 / 472 |
liver | 83% | 364.27 | 187 / 226 | 61% | 2.57 | 247 / 406 |
blood vessel | 100% | 1621.80 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 1107.92 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.05 | 1 / 1 |
adipose | 100% | 1652.57 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 98% | 828.49 | 790 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 675.14 | 815 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 93% | 4.77 | 42 / 45 |
lymph node | 0% | 0 | 0 / 0 | 59% | 1.90 | 17 / 29 |
eye | 0% | 0 | 0 / 0 | 45% | 1.87 | 36 / 80 |
peripheral blood | 32% | 224.13 | 298 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0030100 | Biological process | regulation of endocytosis |
GO_0008150 | Biological process | biological_process |
GO_0005768 | Cellular component | endosome |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0046872 | Molecular function | metal ion binding |
GO_0017124 | Molecular function | SH3 domain binding |
Gene name | RUFY2 |
Protein name | Alternative protein RUFY2 RUN and FYVE domain-containing protein 2 (Rab4-interacting protein related) Antigen MU-RMS-40.17 RUN and FYVE domain containing 2 |
Synonyms | KIAA1537 RABIP4R |
Description | |
Accessions | ENST00000454950.6 [Q8WXA3-5] ENST00000399200.7 [Q8WXA3-4] H0YD93 ENST00000463210.6 S4R3P2 L8EAY6 ENST00000388768.6 [Q8WXA3-3] ENST00000466493.5 Q8WXA3 Q5GIA6 ENST00000602465.6 [Q8WXA3-2] |