Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| platelet | 10 studies | 51% ± 19% | |
| endothelial cell | 8 studies | 26% ± 9% | |
| macrophage | 7 studies | 26% ± 6% | |
| megakaryocyte | 6 studies | 63% ± 18% | |
| epithelial cell | 6 studies | 27% ± 9% | |
| fibroblast | 6 studies | 20% ± 5% | |
| myeloid cell | 5 studies | 21% ± 3% | |
| ciliated cell | 5 studies | 25% ± 8% | |
| astrocyte | 5 studies | 29% ± 10% | |
| oligodendrocyte | 5 studies | 23% ± 5% | |
| microglial cell | 4 studies | 23% ± 5% | |
| abnormal cell | 4 studies | 20% ± 4% | |
| dendritic cell | 4 studies | 24% ± 9% | |
| endothelial cell of lymphatic vessel | 4 studies | 28% ± 6% | |
| megakaryocyte-erythroid progenitor cell | 3 studies | 23% ± 6% | |
| monocyte | 3 studies | 18% ± 0% | |
| basal cell | 3 studies | 23% ± 6% | |
| goblet cell | 3 studies | 25% ± 11% | |
| adipocyte | 3 studies | 18% ± 2% | |
| smooth muscle cell | 3 studies | 16% ± 0% | |
| GABAergic neuron | 3 studies | 32% ± 14% | |
| glutamatergic neuron | 3 studies | 38% ± 13% | |
| interneuron | 3 studies | 37% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 3251.05 | 459 / 459 | 100% | 38.98 | 1118 / 1118 |
| esophagus | 100% | 3296.94 | 1445 / 1445 | 100% | 20.92 | 183 / 183 |
| intestine | 100% | 3218.76 | 966 / 966 | 100% | 24.71 | 527 / 527 |
| prostate | 100% | 3153.32 | 245 / 245 | 100% | 33.15 | 502 / 502 |
| skin | 100% | 3464.14 | 1809 / 1809 | 100% | 26.50 | 472 / 472 |
| stomach | 100% | 2317.15 | 359 / 359 | 100% | 20.76 | 286 / 286 |
| thymus | 100% | 3371.05 | 653 / 653 | 100% | 39.53 | 605 / 605 |
| uterus | 100% | 3600.16 | 170 / 170 | 100% | 31.52 | 459 / 459 |
| lung | 100% | 3339.96 | 578 / 578 | 100% | 23.86 | 1154 / 1155 |
| brain | 100% | 1816.34 | 2638 / 2642 | 100% | 28.01 | 705 / 705 |
| bladder | 100% | 3275.57 | 21 / 21 | 100% | 23.89 | 503 / 504 |
| kidney | 100% | 2735.10 | 89 / 89 | 100% | 34.15 | 899 / 901 |
| ovary | 100% | 2930.93 | 180 / 180 | 100% | 23.84 | 429 / 430 |
| pancreas | 100% | 1705.22 | 327 / 328 | 100% | 31.36 | 178 / 178 |
| liver | 100% | 1447.31 | 226 / 226 | 100% | 21.23 | 404 / 406 |
| adrenal gland | 100% | 3784.61 | 258 / 258 | 99% | 25.28 | 227 / 230 |
| adipose | 100% | 3167.11 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 2795.91 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 35.46 | 29 / 29 |
| muscle | 100% | 2108.32 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 4346.71 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 27.96 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 7.55 | 1 / 1 |
| peripheral blood | 99% | 3231.33 | 920 / 929 | 0% | 0 | 0 / 0 |
| heart | 99% | 1543.16 | 851 / 861 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 99% | 27.94 | 79 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0034498 | Biological process | early endosome to Golgi transport |
| GO_0015031 | Biological process | protein transport |
| GO_0006897 | Biological process | endocytosis |
| GO_0007264 | Biological process | small GTPase-mediated signal transduction |
| GO_0034058 | Biological process | endosomal vesicle fusion |
| GO_0030100 | Biological process | regulation of endocytosis |
| GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
| GO_0016607 | Cellular component | nuclear speck |
| GO_0031901 | Cellular component | early endosome membrane |
| GO_0005768 | Cellular component | endosome |
| GO_0005829 | Cellular component | cytosol |
| GO_0005737 | Cellular component | cytoplasm |
| GO_0042169 | Molecular function | SH2 domain binding |
| GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
| GO_0005515 | Molecular function | protein binding |
| GO_0008289 | Molecular function | lipid binding |
| GO_0046872 | Molecular function | metal ion binding |
| GO_0017124 | Molecular function | SH3 domain binding |
| Gene name | RUFY1 |
| Protein name | RUN and FYVE domain-containing protein 1 (FYVE-finger protein EIP1) (La-binding protein 1) (Rab4-interacting protein) (Zinc finger FYVE domain-containing protein 12) RUN and FYVE domain containing 1 |
| Synonyms | RABIP4 ZFYVE12 |
| Description | FUNCTION: Binds phospholipid vesicles containing phosphatidylinositol 3-phosphate and participates in early endosomal trafficking. . |
| Accessions | ENST00000502434.1 H0YA47 ENST00000639909.2 [Q96T51-1] H0YAC8 ENST00000502984.5 ENST00000319449.9 [Q96T51-1] ENST00000508609.5 J3KPP6 ENST00000393438.6 [Q96T51-2] H0Y9Y8 ENST00000437570.6 [Q96T51-2] ENST00000639102.1 [Q96T51-2] Q96T51 ENST00000393448.6 ENST00000639436.1 [Q96T51-2] |