Name | Number of supported studies | Average coverage | |
---|---|---|---|
pericyte | 12 studies | 24% ± 7% | |
smooth muscle cell | 11 studies | 23% ± 7% | |
fibroblast | 10 studies | 24% ± 8% | |
endothelial cell | 9 studies | 27% ± 11% | |
basal cell | 7 studies | 27% ± 13% | |
epithelial cell | 7 studies | 35% ± 16% | |
myofibroblast cell | 6 studies | 25% ± 7% | |
connective tissue cell | 6 studies | 29% ± 9% | |
ciliated cell | 6 studies | 34% ± 4% | |
abnormal cell | 5 studies | 32% ± 19% | |
neuron | 4 studies | 40% ± 15% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 24% ± 8% | |
retinal ganglion cell | 3 studies | 53% ± 26% | |
endothelial cell of lymphatic vessel | 3 studies | 24% ± 4% | |
mesothelial cell | 3 studies | 33% ± 13% | |
type I pneumocyte | 3 studies | 33% ± 2% | |
retina horizontal cell | 3 studies | 29% ± 11% | |
endothelial cell of vascular tree | 3 studies | 20% ± 3% | |
enteroendocrine cell | 3 studies | 31% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 2529.02 | 258 / 258 | 100% | 141.96 | 230 / 230 |
ovary | 100% | 3043.43 | 180 / 180 | 100% | 209.41 | 430 / 430 |
thymus | 100% | 2852.11 | 653 / 653 | 100% | 122.92 | 605 / 605 |
skin | 100% | 2727.93 | 1808 / 1809 | 100% | 158.60 | 471 / 472 |
uterus | 100% | 3422.85 | 170 / 170 | 100% | 162.51 | 457 / 459 |
kidney | 100% | 2568.87 | 89 / 89 | 99% | 130.78 | 895 / 901 |
prostate | 100% | 3082.56 | 245 / 245 | 99% | 119.25 | 498 / 502 |
breast | 100% | 2740.44 | 459 / 459 | 98% | 124.20 | 1096 / 1118 |
lung | 100% | 2296.53 | 576 / 578 | 97% | 133.50 | 1117 / 1155 |
brain | 100% | 2851.79 | 2641 / 2642 | 96% | 145.31 | 674 / 705 |
pancreas | 96% | 923.64 | 316 / 328 | 99% | 114.36 | 176 / 178 |
esophagus | 100% | 3480.42 | 1445 / 1445 | 95% | 149.49 | 174 / 183 |
bladder | 100% | 3131.43 | 21 / 21 | 94% | 153.36 | 472 / 504 |
stomach | 100% | 1938.25 | 359 / 359 | 87% | 94.98 | 249 / 286 |
intestine | 100% | 2754.44 | 966 / 966 | 81% | 82.96 | 427 / 527 |
liver | 93% | 818.39 | 211 / 226 | 83% | 60.25 | 336 / 406 |
adipose | 100% | 2622.52 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3199.71 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 131.95 | 80 / 80 |
spleen | 100% | 1757.20 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 133.72 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 183.84 | 1 / 1 |
heart | 100% | 1831.67 | 858 / 861 | 0% | 0 | 0 / 0 |
muscle | 93% | 812.25 | 746 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 63% | 437.20 | 589 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 52% | 20.11 | 15 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0005515 | Molecular function | protein binding |
Gene name | RTL8A |
Protein name | Retrotransposon Gag-like protein 8A (Mammalian retrotransposon derived protein 8A) FAM127B protein |
Synonyms | CXX1B FAM127B MAR8A |
Description | |
Accessions | ENST00000370775.3 Q9BWD3 Q6IPB9 |