I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| retinal cone cell | 7 studies | 64% ± 24% | |
| retinal rod cell | 6 studies | 41% ± 18% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| retinal cone cell | 7 studies | 64% ± 24% | |
| retinal rod cell | 6 studies | 41% ± 18% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| eye | 4 studies | 31% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 99% | 74.67 | 455 / 459 | 25% | 0.36 | 282 / 1118 |
| prostate | 98% | 62.62 | 239 / 245 | 20% | 0.31 | 99 / 502 |
| lung | 95% | 53.05 | 548 / 578 | 21% | 0.36 | 247 / 1155 |
| bladder | 95% | 27.05 | 20 / 21 | 14% | 0.25 | 73 / 504 |
| liver | 99% | 67.28 | 224 / 226 | 8% | 0.12 | 33 / 406 |
| spleen | 100% | 144.18 | 241 / 241 | 0% | 0 | 0 / 0 |
| intestine | 97% | 49.28 | 933 / 966 | 1% | 0.08 | 6 / 527 |
| adipose | 98% | 50.53 | 1174 / 1204 | 0% | 0 | 0 / 0 |
| brain | 86% | 24.90 | 2272 / 2642 | 11% | 0.14 | 77 / 705 |
| adrenal gland | 93% | 26.84 | 239 / 258 | 1% | 0.01 | 2 / 230 |
| thymus | 92% | 25.70 | 598 / 653 | 2% | 0.02 | 10 / 605 |
| uterus | 89% | 18.33 | 151 / 170 | 3% | 0.05 | 16 / 459 |
| stomach | 88% | 21.73 | 315 / 359 | 5% | 0.06 | 13 / 286 |
| peripheral blood | 89% | 88.23 | 825 / 929 | 0% | 0 | 0 / 0 |
| skin | 80% | 19.54 | 1451 / 1809 | 6% | 0.09 | 27 / 472 |
| esophagus | 82% | 18.28 | 1181 / 1445 | 3% | 0.06 | 6 / 183 |
| pancreas | 81% | 16.21 | 266 / 328 | 3% | 0.10 | 6 / 178 |
| blood vessel | 79% | 21.19 | 1056 / 1335 | 0% | 0 | 0 / 0 |
| heart | 78% | 19.27 | 668 / 861 | 0% | 0 | 0 / 0 |
| kidney | 71% | 16.75 | 63 / 89 | 4% | 0.06 | 35 / 901 |
| ovary | 68% | 12.91 | 123 / 180 | 3% | 0.06 | 11 / 430 |
| muscle | 32% | 5.13 | 254 / 803 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 10% | 0.17 | 3 / 29 |
| eye | 0% | 0 | 0 / 0 | 6% | 0.20 | 5 / 80 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_1905515 | Biological process | non-motile cilium assembly |
| GO_0007601 | Biological process | visual perception |
| GO_0061351 | Biological process | neural precursor cell proliferation |
| GO_0046548 | Biological process | retinal rod cell development |
| GO_0005930 | Cellular component | axoneme |
| GO_0032391 | Cellular component | photoreceptor connecting cilium |
| GO_0120206 | Cellular component | photoreceptor distal connecting cilium |
| GO_0035253 | Cellular component | ciliary rootlet |
| GO_0031870 | Molecular function | thromboxane A2 receptor binding |
| GO_0005515 | Molecular function | protein binding |
| Gene name | RPGRIP1 |
| Protein name | RPGR interacting protein 1 RPGRIP1d X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 (RPGR-interacting protein 1) |
| Synonyms | |
| Description | FUNCTION: May function as scaffolding protein. Required for normal location of RPGR at the connecting cilium of photoreceptor cells. Required for normal disk morphogenesis and disk organization in the outer segment of photoreceptor cells and for survival of photoreceptor cells. . |
| Accessions | ENST00000555587.5 ENST00000382933.8 [Q96KN7-4] ENST00000555322.5 ENST00000556336.5 ENST00000557351.1 H0YIY1 H0YJK6 ENST00000557606.1 ENST00000557771.5 ENST00000554303.1 G3V577 H0YJ18 G3V236 ENST00000555489.5 ENST00000400017.7 [Q96KN7-1] G3V3F7 G3V3I7 Q5D221 Q96KN7 H0YJ99 |
