Name | Number of supported studies | Average coverage | |
---|---|---|---|
natural killer cell | 6 studies | 19% ± 3% | |
CD16-positive, CD56-dim natural killer cell, human | 4 studies | 20% ± 4% | |
CD4-positive, alpha-beta T cell | 4 studies | 20% ± 3% | |
epithelial cell | 4 studies | 34% ± 10% | |
endothelial cell | 4 studies | 24% ± 5% | |
ciliated cell | 4 studies | 27% ± 5% | |
pancreatic A cell | 3 studies | 26% ± 5% | |
B cell | 3 studies | 22% ± 3% | |
CD8-positive, alpha-beta T cell | 3 studies | 22% ± 3% | |
conventional dendritic cell | 3 studies | 27% ± 9% | |
hematopoietic precursor cell | 3 studies | 21% ± 8% | |
non-classical monocyte | 3 studies | 24% ± 8% | |
glutamatergic neuron | 3 studies | 22% ± 4% | |
dendritic cell | 3 studies | 30% ± 12% | |
plasmacytoid dendritic cell | 3 studies | 22% ± 3% | |
CD8-positive, alpha-beta memory T cell | 3 studies | 19% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1492.38 | 1445 / 1445 | 100% | 40.36 | 183 / 183 |
lung | 100% | 1348.64 | 578 / 578 | 100% | 44.86 | 1155 / 1155 |
ovary | 100% | 1227.09 | 180 / 180 | 100% | 48.03 | 430 / 430 |
pancreas | 100% | 792.36 | 328 / 328 | 100% | 43.92 | 178 / 178 |
uterus | 100% | 1615.93 | 170 / 170 | 100% | 59.83 | 459 / 459 |
breast | 100% | 1595.77 | 459 / 459 | 100% | 57.24 | 1117 / 1118 |
thymus | 100% | 1497.35 | 653 / 653 | 100% | 50.61 | 604 / 605 |
prostate | 100% | 1370.66 | 245 / 245 | 100% | 48.65 | 501 / 502 |
brain | 100% | 974.28 | 2635 / 2642 | 100% | 42.09 | 705 / 705 |
bladder | 100% | 1554.52 | 21 / 21 | 100% | 50.32 | 502 / 504 |
intestine | 100% | 1649.12 | 966 / 966 | 99% | 48.29 | 524 / 527 |
skin | 100% | 1667.73 | 1809 / 1809 | 99% | 55.58 | 469 / 472 |
stomach | 100% | 1245.99 | 359 / 359 | 99% | 45.89 | 284 / 286 |
liver | 100% | 867.69 | 226 / 226 | 99% | 28.58 | 403 / 406 |
kidney | 100% | 1287.64 | 89 / 89 | 99% | 29.25 | 893 / 901 |
adrenal gland | 100% | 1284.21 | 258 / 258 | 95% | 29.29 | 218 / 230 |
adipose | 100% | 1508.32 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1501.17 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 67.32 | 29 / 29 |
muscle | 100% | 1522.95 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1632.29 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 54.62 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 33.32 | 1 / 1 |
heart | 99% | 1248.92 | 853 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 1034.20 | 885 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 93% | 26.33 | 74 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000460 | Biological process | maturation of 5.8S rRNA |
GO_0000470 | Biological process | maturation of LSU-rRNA |
GO_0030687 | Cellular component | preribosome, large subunit precursor |
GO_0005730 | Cellular component | nucleolus |
GO_0042134 | Molecular function | rRNA primary transcript binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | RPF1 |
Protein name | Ribosome production factor 1 homolog Ribosome production factor 1 (Brix domain-containing protein 5) (Ribosome biogenesis protein RPF1) |
Synonyms | BXDC5 |
Description | FUNCTION: May be required for ribosome biogenesis. . |
Accessions | Q9H9Y2 X6R7Q1 ENST00000370656.5 ENST00000370654.6 |