Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal rod cell | 9 studies | 80% ± 20% | |
retinal cone cell | 8 studies | 59% ± 25% | |
amacrine cell | 4 studies | 36% ± 7% | |
retinal bipolar neuron | 3 studies | 59% ± 5% | |
retinal ganglion cell | 3 studies | 58% ± 22% | |
OFF-bipolar cell | 3 studies | 31% ± 10% | |
retina horizontal cell | 3 studies | 26% ± 7% | |
microglial cell | 3 studies | 41% ± 6% | |
Mueller cell | 3 studies | 37% ± 14% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 8 studies | 53% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1551.11 | 2641 / 2642 | 100% | 70.93 | 705 / 705 |
prostate | 100% | 446.09 | 244 / 245 | 99% | 8.11 | 499 / 502 |
thymus | 98% | 299.56 | 643 / 653 | 99% | 8.81 | 598 / 605 |
uterus | 100% | 448.63 | 170 / 170 | 94% | 6.31 | 432 / 459 |
breast | 100% | 402.60 | 459 / 459 | 93% | 5.77 | 1035 / 1118 |
adrenal gland | 99% | 431.67 | 256 / 258 | 90% | 11.75 | 207 / 230 |
bladder | 100% | 488.62 | 21 / 21 | 87% | 4.73 | 438 / 504 |
ovary | 100% | 554.62 | 180 / 180 | 86% | 4.25 | 370 / 430 |
kidney | 92% | 261.87 | 82 / 89 | 94% | 5.66 | 843 / 901 |
lung | 96% | 286.03 | 553 / 578 | 87% | 4.55 | 1001 / 1155 |
skin | 94% | 238.95 | 1697 / 1809 | 88% | 5.01 | 416 / 472 |
intestine | 97% | 388.28 | 937 / 966 | 75% | 2.77 | 394 / 527 |
esophagus | 99% | 379.60 | 1426 / 1445 | 61% | 2.05 | 111 / 183 |
stomach | 81% | 283.96 | 290 / 359 | 64% | 2.30 | 184 / 286 |
liver | 56% | 183.34 | 127 / 226 | 74% | 3.02 | 302 / 406 |
pancreas | 33% | 55.15 | 109 / 328 | 94% | 6.13 | 168 / 178 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.84 | 1 / 1 |
blood vessel | 100% | 685.68 | 1331 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 395.59 | 240 / 241 | 0% | 0 | 0 / 0 |
adipose | 99% | 430.24 | 1197 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 31.64 | 79 / 80 |
lymph node | 0% | 0 | 0 / 0 | 97% | 3.82 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 84% | 3.46 | 38 / 45 |
heart | 65% | 163.52 | 560 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 36% | 116.02 | 333 / 929 | 0% | 0 | 0 / 0 |
muscle | 35% | 66.85 | 281 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007601 | Biological process | visual perception |
GO_0051260 | Biological process | protein homooligomerization |
GO_0010468 | Biological process | regulation of gene expression |
GO_0050908 | Biological process | detection of light stimulus involved in visual perception |
GO_0060219 | Biological process | camera-type eye photoreceptor cell differentiation |
GO_0007155 | Biological process | cell adhesion |
GO_0035845 | Biological process | photoreceptor cell outer segment organization |
GO_0051291 | Biological process | protein heterooligomerization |
GO_1903546 | Biological process | protein localization to photoreceptor outer segment |
GO_0061298 | Biological process | retina vasculature development in camera-type eye |
GO_0042622 | Cellular component | photoreceptor outer segment membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ROM1 |
Protein name | Rod outer segment membrane protein 1 (ROSP1) (Tetraspanin-23) (Tspan-23) Retinal outer segment membrane protein 1 |
Synonyms | TSPAN23 |
Description | FUNCTION: Plays a role in rod outer segment (ROS) morphogenesis (By similarity). May play a role with PRPH2 in the maintenance of the structure of ROS curved disks (By similarity). Plays a role in the organization of the ROS and maintenance of ROS disk diameter (By similarity). Involved in the maintenance of the retina outer nuclear layer (By similarity). . |
Accessions | ENST00000278833.4 E9PMR7 E9PKF5 Q03395 ENST00000525947.1 ENST00000534093.5 E9PS24 ENST00000525801.1 |