Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 12 studies | 33% ± 17% | |
glutamatergic neuron | 12 studies | 73% ± 18% | |
astrocyte | 11 studies | 40% ± 22% | |
GABAergic neuron | 10 studies | 78% ± 21% | |
microglial cell | 9 studies | 41% ± 21% | |
endothelial cell | 8 studies | 50% ± 17% | |
myofibroblast cell | 8 studies | 37% ± 23% | |
neuron | 7 studies | 51% ± 16% | |
retinal ganglion cell | 7 studies | 81% ± 24% | |
interneuron | 6 studies | 65% ± 31% | |
retina horizontal cell | 6 studies | 56% ± 28% | |
oligodendrocyte | 6 studies | 46% ± 22% | |
oligodendrocyte precursor cell | 5 studies | 40% ± 15% | |
amacrine cell | 5 studies | 31% ± 9% | |
podocyte | 4 studies | 56% ± 4% | |
granule cell | 4 studies | 60% ± 15% | |
pericyte | 4 studies | 34% ± 30% | |
connective tissue cell | 4 studies | 37% ± 13% | |
smooth muscle cell | 4 studies | 30% ± 8% | |
ON-bipolar cell | 4 studies | 74% ± 32% | |
GABAergic interneuron | 3 studies | 79% ± 6% | |
progenitor cell | 3 studies | 71% ± 26% | |
GABAergic amacrine cell | 3 studies | 78% ± 11% | |
glycinergic amacrine cell | 3 studies | 58% ± 14% | |
retinal cone cell | 3 studies | 46% ± 38% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 95% | 1325.59 | 2497 / 2642 | 94% | 8.22 | 664 / 705 |
lung | 98% | 1438.86 | 568 / 578 | 45% | 1.46 | 516 / 1155 |
ovary | 93% | 968.13 | 167 / 180 | 20% | 0.52 | 88 / 430 |
skin | 63% | 203.32 | 1131 / 1809 | 36% | 1.73 | 172 / 472 |
kidney | 76% | 244.58 | 68 / 89 | 16% | 0.37 | 148 / 901 |
esophagus | 40% | 225.24 | 584 / 1445 | 45% | 1.21 | 83 / 183 |
spleen | 82% | 228.29 | 198 / 241 | 0% | 0 | 0 / 0 |
adrenal gland | 15% | 47.24 | 38 / 258 | 64% | 7.65 | 147 / 230 |
prostate | 56% | 154.42 | 137 / 245 | 15% | 0.24 | 73 / 502 |
intestine | 33% | 63.47 | 323 / 966 | 34% | 0.94 | 181 / 527 |
blood vessel | 67% | 364.74 | 889 / 1335 | 0% | 0 | 0 / 0 |
uterus | 33% | 121.07 | 56 / 170 | 29% | 1.15 | 132 / 459 |
pancreas | 23% | 39.86 | 76 / 328 | 37% | 0.88 | 65 / 178 |
breast | 12% | 22.59 | 57 / 459 | 31% | 2.70 | 348 / 1118 |
tonsil | 0% | 0 | 0 / 0 | 38% | 0.99 | 17 / 45 |
stomach | 4% | 6.67 | 15 / 359 | 34% | 0.87 | 96 / 286 |
adipose | 35% | 89.98 | 418 / 1204 | 0% | 0 | 0 / 0 |
bladder | 14% | 49.05 | 3 / 21 | 19% | 0.62 | 97 / 504 |
thymus | 2% | 2.94 | 11 / 653 | 14% | 1.22 | 87 / 605 |
lymph node | 0% | 0 | 0 / 0 | 14% | 1.91 | 4 / 29 |
liver | 2% | 3.44 | 5 / 226 | 8% | 0.29 | 33 / 406 |
eye | 0% | 0 | 0 / 0 | 10% | 0.34 | 8 / 80 |
heart | 1% | 2.18 | 11 / 861 | 0% | 0 | 0 / 0 |
muscle | 0% | 0.78 | 2 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0001657 | Biological process | ureteric bud development |
GO_0035904 | Biological process | aorta development |
GO_0003148 | Biological process | outflow tract septum morphogenesis |
GO_0050772 | Biological process | positive regulation of axonogenesis |
GO_0003272 | Biological process | endocardial cushion formation |
GO_0001656 | Biological process | metanephros development |
GO_0003180 | Biological process | aortic valve morphogenesis |
GO_0050925 | Biological process | negative regulation of negative chemotaxis |
GO_0032870 | Biological process | cellular response to hormone stimulus |
GO_0006935 | Biological process | chemotaxis |
GO_0021891 | Biological process | olfactory bulb interneuron development |
GO_0003129 | Biological process | heart induction |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0051964 | Biological process | negative regulation of synapse assembly |
GO_0060412 | Biological process | ventricular septum morphogenesis |
GO_0007417 | Biological process | central nervous system development |
GO_0007420 | Biological process | brain development |
GO_0003184 | Biological process | pulmonary valve morphogenesis |
GO_0045747 | Biological process | positive regulation of Notch signaling pathway |
GO_0016199 | Biological process | axon midline choice point recognition |
GO_0031290 | Biological process | retinal ganglion cell axon guidance |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0061364 | Biological process | apoptotic process involved in luteolysis |
GO_0007411 | Biological process | axon guidance |
GO_0005886 | Cellular component | plasma membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0009986 | Cellular component | cell surface |
GO_0030673 | Cellular component | axolemma |
GO_0008046 | Molecular function | axon guidance receptor activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ROBO2 |
Protein name | Roundabout axon guidance receptor-like protein 2 Roundabout homolog 2 Roundabout guidance receptor 2 |
Synonyms | KIAA1568 |
Description | FUNCTION: Receptor for SLIT2, and probably SLIT1, which are thought to act as molecular guidance cue in cellular migration, including axonal navigation at the ventral midline of the neural tube and projection of axons to different regions during neuronal development. |
Accessions | ENST00000696630.1 H9XFA4 F8WBR3 ENST00000602589.5 A0A8Q3SIP4 H7C4W9 ENST00000332191.13 ENST00000475334.2 A0A8Q3SIU0 ENST00000696629.1 ENST00000696574.1 A0A994J5N3 ENST00000473767.5 F8W703 H7C4U9 ENST00000705983.1 A0A8Q3SIW8 H7C4V8 ENST00000696593.1 ENST00000696631.1 ENST00000471893.2 A0A994J7I9 ENST00000461745.5 [Q9HCK4-1] ENST00000705984.1 ENST00000490534.2 A0A8Q3WLE3 R4GMM8 A0A8Q3SIT0 ENST00000490991.5 ENST00000487694.7 [Q9HCK4-3] Q9HCK4 H7C4J7 |