Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 4 studies | 27% ± 11% | |
epithelial cell | 3 studies | 32% ± 4% | |
endothelial cell | 3 studies | 18% ± 2% | |
GABAergic neuron | 3 studies | 26% ± 3% | |
glutamatergic neuron | 3 studies | 30% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 3 studies | 23% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1755.51 | 1445 / 1445 | 100% | 45.72 | 183 / 183 |
intestine | 100% | 1766.85 | 966 / 966 | 100% | 43.54 | 527 / 527 |
breast | 100% | 1818.88 | 459 / 459 | 100% | 37.77 | 1116 / 1118 |
bladder | 100% | 1450.71 | 21 / 21 | 100% | 33.76 | 503 / 504 |
prostate | 100% | 1531.30 | 245 / 245 | 100% | 29.60 | 501 / 502 |
stomach | 100% | 1344.13 | 358 / 359 | 100% | 43.96 | 286 / 286 |
brain | 100% | 2137.76 | 2634 / 2642 | 100% | 23.72 | 704 / 705 |
lung | 99% | 1676.02 | 575 / 578 | 100% | 30.93 | 1155 / 1155 |
ovary | 99% | 1064.80 | 179 / 180 | 100% | 18.42 | 429 / 430 |
thymus | 100% | 1553.41 | 652 / 653 | 99% | 24.73 | 600 / 605 |
uterus | 100% | 1401.86 | 170 / 170 | 99% | 27.81 | 454 / 459 |
pancreas | 99% | 971.37 | 324 / 328 | 99% | 28.81 | 177 / 178 |
kidney | 100% | 1258.43 | 89 / 89 | 98% | 24.19 | 883 / 901 |
adrenal gland | 100% | 2328.29 | 258 / 258 | 97% | 27.69 | 223 / 230 |
skin | 100% | 2518.28 | 1807 / 1809 | 95% | 34.05 | 448 / 472 |
liver | 99% | 842.87 | 224 / 226 | 87% | 11.79 | 355 / 406 |
adipose | 100% | 2065.44 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.55 | 29 / 29 |
spleen | 100% | 1797.08 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 30.12 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.89 | 1 / 1 |
muscle | 100% | 2080.86 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1507.49 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 1079.16 | 843 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 71% | 1276.93 | 658 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 70% | 13.01 | 56 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0070936 | Biological process | protein K48-linked ubiquitination |
GO_0044314 | Biological process | protein K27-linked ubiquitination |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0006355 | Biological process | regulation of DNA-templated transcription |
GO_0060765 | Biological process | regulation of androgen receptor signaling pathway |
GO_0048675 | Biological process | axon extension |
GO_0030517 | Biological process | negative regulation of axon extension |
GO_0085020 | Biological process | protein K6-linked ubiquitination |
GO_0016605 | Cellular component | PML body |
GO_0005737 | Cellular component | cytoplasm |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0030424 | Cellular component | axon |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0050681 | Molecular function | nuclear androgen receptor binding |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | RNF6 |
Protein name | E3 ubiquitin-protein ligase RNF6 (EC 2.3.2.27) Ring finger protein 6 isoform 2 Ring finger protein 6 isoform 1 |
Synonyms | SPG2 |
Description | FUNCTION: E3 ubiquitin-protein ligase mediating 'Lys-48'-linked polyubiquitination of LIMK1 and its subsequent targeting to the proteasome for degradation (By similarity). Negatively regulates axonal outgrowth through regulation of the LIMK1 turnover (By similarity). Mediates 'Lys-6' and 'Lys-27'-linked polyubiquitination of AR/androgen receptor thereby modulating its transcriptional activity . May also bind DNA and function as a transcriptional regulator (By similarity). Mediates polyubiquitination of QKI in macrophages, leading to its degradation (By similarity). . |
Accessions | ENST00000381588.9 [Q9Y252-1] A0A024RDP2 A0A0S2Z4G9 ENST00000346166.7 [Q9Y252-1] ENST00000381570.7 [Q9Y252-1] Q9Y252 |