Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 3 studies | 25% ± 4% |
Insufficient scRNA-seq data for expression of RNF26 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2088.68 | 1445 / 1445 | 100% | 45.44 | 183 / 183 |
ovary | 100% | 1513.54 | 180 / 180 | 100% | 61.45 | 430 / 430 |
intestine | 100% | 1759.72 | 966 / 966 | 99% | 42.80 | 524 / 527 |
stomach | 100% | 1512.56 | 359 / 359 | 99% | 44.18 | 284 / 286 |
lung | 100% | 1286.26 | 578 / 578 | 99% | 46.94 | 1146 / 1155 |
skin | 100% | 2050.25 | 1809 / 1809 | 99% | 39.56 | 467 / 472 |
thymus | 100% | 1371.70 | 653 / 653 | 99% | 30.51 | 596 / 605 |
uterus | 100% | 1972.36 | 170 / 170 | 98% | 41.80 | 452 / 459 |
prostate | 100% | 1444.75 | 245 / 245 | 98% | 33.72 | 494 / 502 |
breast | 100% | 1396.17 | 459 / 459 | 98% | 36.90 | 1098 / 1118 |
brain | 98% | 946.74 | 2593 / 2642 | 100% | 35.68 | 704 / 705 |
pancreas | 99% | 753.64 | 325 / 328 | 99% | 33.20 | 176 / 178 |
kidney | 100% | 1168.63 | 89 / 89 | 98% | 34.58 | 879 / 901 |
bladder | 100% | 1826.38 | 21 / 21 | 97% | 42.43 | 491 / 504 |
liver | 100% | 1155.90 | 226 / 226 | 95% | 28.07 | 384 / 406 |
adrenal gland | 100% | 1479.31 | 258 / 258 | 88% | 21.98 | 203 / 230 |
adipose | 100% | 1342.78 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1694.74 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 39.42 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 32.20 | 29 / 29 |
spleen | 100% | 1367.24 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 35.48 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 24.94 | 1 / 1 |
heart | 97% | 762.56 | 836 / 861 | 0% | 0 | 0 / 0 |
muscle | 90% | 471.06 | 719 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 888.22 | 820 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006511 | Biological process | ubiquitin-dependent protein catabolic process |
GO_0016567 | Biological process | protein ubiquitination |
GO_0070979 | Biological process | protein K11-linked ubiquitination |
GO_0050687 | Biological process | negative regulation of defense response to virus |
GO_0032479 | Biological process | regulation of type I interferon production |
GO_0007032 | Biological process | endosome organization |
GO_1905719 | Biological process | protein localization to perinuclear region of cytoplasm |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0005515 | Molecular function | protein binding |
GO_0008270 | Molecular function | zinc ion binding |
Gene name | RNF26 |
Protein name | E3 ubiquitin-protein ligase RNF26 (EC 2.3.2.27) (RING finger protein 26) |
Synonyms | |
Description | FUNCTION: E3 ubiquitin-protein ligase that plays a key role in endosome organization by retaining vesicles in the perinuclear cloud . Acts as a platform for perinuclear positioning of the endosomal system by mediating ubiquitination of SQSTM1 through interaction with the ubiquitin conjugating enzyme UBE2J1 . Ubiquitinated SQSTM1 attracts specific vesicle-associated adapters, forming a molecular bridge that restrains cognate vesicles in the perinuclear region and organizes the endosomal pathway for efficient cargo transport . Also acts as a regulator of type I interferon production in response to viral infection by mediating the formation of 'Lys-11'-linked polyubiquitin chains on TMEM173/STING, leading to stabilize TMEM173/STING . Also required to limit type I interferon response by promoting autophagic degradation of IRF3 . . |
Accessions | ENST00000311413.5 Q9BY78 |