Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 20 studies | 31% ± 11% | |
macrophage | 7 studies | 27% ± 8% | |
connective tissue cell | 6 studies | 37% ± 22% | |
adventitial cell | 4 studies | 27% ± 12% | |
myofibroblast cell | 4 studies | 25% ± 11% | |
pericyte | 3 studies | 27% ± 8% |
Insufficient scRNA-seq data for expression of RCN3 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3189.19 | 458 / 459 | 96% | 104.94 | 1073 / 1118 |
ovary | 100% | 3223.24 | 180 / 180 | 94% | 89.94 | 406 / 430 |
lung | 100% | 2869.67 | 576 / 578 | 93% | 79.53 | 1073 / 1155 |
intestine | 100% | 2476.64 | 965 / 966 | 91% | 60.53 | 477 / 527 |
bladder | 100% | 2913.24 | 21 / 21 | 84% | 78.25 | 423 / 504 |
uterus | 99% | 3636.71 | 169 / 170 | 84% | 95.21 | 387 / 459 |
skin | 94% | 6831.93 | 1707 / 1809 | 88% | 133.62 | 417 / 472 |
prostate | 99% | 2160.97 | 242 / 245 | 75% | 24.88 | 375 / 502 |
stomach | 77% | 1147.56 | 277 / 359 | 95% | 73.17 | 272 / 286 |
kidney | 99% | 2202.51 | 88 / 89 | 69% | 33.66 | 621 / 901 |
adrenal gland | 100% | 2052.95 | 258 / 258 | 65% | 27.79 | 149 / 230 |
thymus | 99% | 1926.32 | 647 / 653 | 65% | 23.16 | 391 / 605 |
esophagus | 79% | 1201.38 | 1139 / 1445 | 84% | 51.33 | 154 / 183 |
liver | 97% | 2159.69 | 219 / 226 | 62% | 20.45 | 251 / 406 |
pancreas | 39% | 363.10 | 129 / 328 | 96% | 142.10 | 170 / 178 |
spleen | 100% | 4338.60 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 104.99 | 1 / 1 |
adipose | 100% | 3879.93 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4917.17 | 1331 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 60.15 | 26 / 29 |
tonsil | 0% | 0 | 0 / 0 | 87% | 49.20 | 39 / 45 |
heart | 86% | 1865.19 | 741 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 70% | 1433.99 | 647 / 929 | 0% | 0 | 0 / 0 |
brain | 15% | 113.03 | 397 / 2642 | 54% | 20.79 | 384 / 705 |
eye | 0% | 0 | 0 / 0 | 43% | 13.46 | 34 / 80 |
muscle | 24% | 213.92 | 196 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060428 | Biological process | lung epithelium development |
GO_0051896 | Biological process | regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction |
GO_0015031 | Biological process | protein transport |
GO_0055091 | Biological process | phospholipid homeostasis |
GO_0032964 | Biological process | collagen biosynthetic process |
GO_0010952 | Biological process | positive regulation of peptidase activity |
GO_0036503 | Biological process | ERAD pathway |
GO_0043129 | Biological process | surfactant homeostasis |
GO_0009306 | Biological process | protein secretion |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RCN3 |
Protein name | Reticulocalbin 3 Reticulocalbin-3 (EF-hand calcium-binding protein RLP49) |
Synonyms | UNQ239/PRO272 |
Description | FUNCTION: Probable molecular chaperone assisting protein biosynthesis and transport in the endoplasmic reticulum . Required for the proper biosynthesis and transport of pulmonary surfactant-associated protein A/SP-A, pulmonary surfactant-associated protein D/SP-D and the lipid transporter ABCA3 (By similarity). By regulating both the proper expression and the degradation through the endoplasmic reticulum-associated protein degradation pathway of these proteins plays a crucial role in pulmonary surfactant homeostasis (By similarity). Has an anti-fibrotic activity by negatively regulating the secretion of type I and type III collagens . This calcium-binding protein also transiently associates with immature PCSK6 and regulates its secretion . . |
Accessions | Q96D15 M0QZH0 ENST00000270645.8 ENST00000593483.1 M0QZU3 ENST00000597801.1 ENST00000598833.1 M0QYB8 |