Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 27% ± 14% | |
astrocyte | 6 studies | 25% ± 8% | |
glutamatergic neuron | 6 studies | 41% ± 24% | |
neuron | 5 studies | 28% ± 8% | |
interneuron | 5 studies | 34% ± 21% | |
oligodendrocyte precursor cell | 5 studies | 32% ± 11% | |
basal cell | 5 studies | 27% ± 10% | |
GABAergic neuron | 5 studies | 42% ± 21% | |
epithelial cell | 4 studies | 28% ± 9% | |
oligodendrocyte | 4 studies | 21% ± 2% | |
macrophage | 3 studies | 24% ± 6% | |
microglial cell | 3 studies | 24% ± 4% | |
endothelial cell of lymphatic vessel | 3 studies | 19% ± 3% | |
type I pneumocyte | 3 studies | 19% ± 3% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 7 studies | 34% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3470.74 | 1445 / 1445 | 100% | 38.11 | 183 / 183 |
skin | 100% | 3504.79 | 1809 / 1809 | 99% | 39.57 | 469 / 472 |
ovary | 100% | 4533.41 | 180 / 180 | 99% | 22.93 | 425 / 430 |
pancreas | 99% | 1747.87 | 326 / 328 | 98% | 19.47 | 175 / 178 |
breast | 100% | 3076.16 | 459 / 459 | 97% | 20.60 | 1090 / 1118 |
thymus | 100% | 4680.22 | 653 / 653 | 97% | 25.63 | 587 / 605 |
lung | 100% | 3283.15 | 577 / 578 | 97% | 21.14 | 1122 / 1155 |
stomach | 100% | 2626.49 | 359 / 359 | 97% | 19.44 | 277 / 286 |
intestine | 100% | 3278.31 | 965 / 966 | 97% | 15.25 | 510 / 527 |
bladder | 100% | 4725.00 | 21 / 21 | 96% | 19.54 | 486 / 504 |
prostate | 100% | 4968.32 | 245 / 245 | 96% | 16.18 | 480 / 502 |
uterus | 100% | 5398.18 | 170 / 170 | 95% | 21.37 | 437 / 459 |
brain | 97% | 3018.14 | 2573 / 2642 | 97% | 17.80 | 682 / 705 |
kidney | 100% | 2473.93 | 89 / 89 | 93% | 12.88 | 837 / 901 |
adrenal gland | 100% | 3094.94 | 258 / 258 | 90% | 16.68 | 206 / 230 |
liver | 79% | 745.88 | 179 / 226 | 42% | 4.63 | 171 / 406 |
spleen | 100% | 3629.86 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.02 | 1 / 1 |
blood vessel | 100% | 2278.75 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 2078.80 | 1201 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 27.38 | 79 / 80 |
heart | 97% | 2397.79 | 833 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 24.60 | 43 / 45 |
muscle | 95% | 1047.52 | 759 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 72% | 6.17 | 21 / 29 |
peripheral blood | 44% | 1146.68 | 409 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001501 | Biological process | skeletal system development |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0040015 | Biological process | negative regulation of multicellular organism growth |
GO_0032922 | Biological process | circadian regulation of gene expression |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | RAI1 |
Protein name | Epididymis secretory sperm binding protein Li 85p (Ribonuclease A I1) Retinoic acid induced 1 Retinoic acid-induced protein 1 |
Synonyms | HEL-S-85p KIAA1820 |
Description | FUNCTION: Transcriptional regulator of the circadian clock components: CLOCK, BMAL1, BMAL2, PER1/3, CRY1/2, NR1D1/2 and RORA/C. Positively regulates the transcriptional activity of CLOCK a core component of the circadian clock. Regulates transcription through chromatin remodeling by interacting with other proteins in chromatin as well as proteins in the basic transcriptional machinery. May be important for embryonic and postnatal development. May be involved in neuronal differentiation. . |
Accessions | J3QR08 ENST00000583166.1 ENST00000395774.1 J3QLL5 A8MXE8 ENST00000353383.6 [Q7Z5J4-1] ENST00000471135.2 W0UV30 Q7Z5J4 |