Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 6 studies | 35% ± 19% | |
oligodendrocyte precursor cell | 5 studies | 27% ± 8% | |
interneuron | 4 studies | 32% ± 14% | |
GABAergic neuron | 4 studies | 32% ± 14% | |
astrocyte | 4 studies | 27% ± 13% | |
transit amplifying cell | 3 studies | 35% ± 20% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 5 studies | 33% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 1019.80 | 459 / 459 | 100% | 13.23 | 1118 / 1118 |
esophagus | 100% | 658.34 | 1445 / 1445 | 100% | 10.05 | 183 / 183 |
stomach | 100% | 477.21 | 359 / 359 | 100% | 10.85 | 286 / 286 |
lung | 100% | 711.72 | 578 / 578 | 100% | 7.85 | 1152 / 1155 |
intestine | 100% | 739.91 | 966 / 966 | 100% | 11.55 | 525 / 527 |
prostate | 100% | 906.09 | 245 / 245 | 100% | 7.05 | 500 / 502 |
uterus | 100% | 796.61 | 170 / 170 | 100% | 10.86 | 457 / 459 |
ovary | 100% | 720.89 | 180 / 180 | 99% | 8.56 | 427 / 430 |
thymus | 100% | 797.60 | 653 / 653 | 99% | 7.62 | 599 / 605 |
bladder | 100% | 656.52 | 21 / 21 | 99% | 9.99 | 498 / 504 |
skin | 100% | 1122.86 | 1809 / 1809 | 96% | 10.99 | 451 / 472 |
pancreas | 98% | 256.21 | 320 / 328 | 98% | 5.90 | 174 / 178 |
brain | 95% | 367.83 | 2514 / 2642 | 99% | 7.31 | 697 / 705 |
adrenal gland | 100% | 610.61 | 258 / 258 | 87% | 4.21 | 200 / 230 |
liver | 99% | 345.40 | 224 / 226 | 88% | 4.36 | 356 / 406 |
kidney | 100% | 402.21 | 89 / 89 | 86% | 3.63 | 777 / 901 |
adipose | 100% | 669.33 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 10.05 | 29 / 29 |
spleen | 100% | 903.29 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 12.98 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.87 | 1 / 1 |
blood vessel | 100% | 537.13 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 92% | 258.76 | 791 / 861 | 0% | 0 | 0 / 0 |
muscle | 82% | 160.43 | 655 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 80% | 750.42 | 746 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 64% | 2.63 | 51 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006281 | Biological process | DNA repair |
GO_0006974 | Biological process | DNA damage response |
GO_0051865 | Biological process | protein autoubiquitination |
GO_0006301 | Biological process | postreplication repair |
GO_0051984 | Biological process | positive regulation of chromosome segregation |
GO_0006513 | Biological process | protein monoubiquitination |
GO_0042405 | Cellular component | nuclear inclusion body |
GO_0005813 | Cellular component | centrosome |
GO_0005657 | Cellular component | replication fork |
GO_0005654 | Cellular component | nucleoplasm |
GO_0097505 | Cellular component | Rad6-Rad18 complex |
GO_0016604 | Cellular component | nuclear body |
GO_0005737 | Cellular component | cytoplasm |
GO_0035861 | Cellular component | site of double-strand break |
GO_0005634 | Cellular component | nucleus |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0003697 | Molecular function | single-stranded DNA binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0031625 | Molecular function | ubiquitin protein ligase binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0031593 | Molecular function | polyubiquitin modification-dependent protein binding |
GO_0000403 | Molecular function | Y-form DNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003684 | Molecular function | damaged DNA binding |
Gene name | RAD18 |
Protein name | RING-type E3 ubiquitin transferase (EC 2.3.2.27) (RING-type E3 ubiquitin transferase RAD18) E3 ubiquitin-protein ligase RAD18 (EC 2.3.2.27) (Postreplication repair protein RAD18) (hHR18) (hRAD18) (RING finger protein 73) (RING-type E3 ubiquitin transferase RAD18) RAD18 E3 ubiquitin protein ligase |
Synonyms | RNF73 |
Description | FUNCTION: E3 ubiquitin-protein ligase involved in postreplication repair of UV-damaged DNA. Postreplication repair functions in gap-filling of a daughter strand on replication of damaged DNA. Associates to the E2 ubiquitin conjugating enzyme UBE2B to form the UBE2B-RAD18 ubiquitin ligase complex involved in mono-ubiquitination of DNA-associated PCNA on 'Lys-164'. Has ssDNA binding activity. . |
Accessions | ENST00000264926.7 F8WE49 F8WAZ7 ENST00000429790.1 C9J0Q4 F8WFA6 ENST00000421052.5 H7C0A5 ENST00000413832.1 ENST00000427329.5 Q9NS91 ENST00000415439.5 ENST00000418463.5 H7C3I2 |