Name | Number of supported studies | Average coverage | |
---|---|---|---|
macrophage | 31 studies | 30% ± 10% | |
myeloid cell | 12 studies | 31% ± 9% | |
monocyte | 11 studies | 24% ± 4% | |
classical monocyte | 11 studies | 23% ± 6% | |
non-classical monocyte | 7 studies | 22% ± 3% | |
microglial cell | 5 studies | 22% ± 7% | |
ciliated cell | 5 studies | 20% ± 2% | |
conventional dendritic cell | 5 studies | 23% ± 7% | |
type I pneumocyte | 5 studies | 18% ± 2% | |
mononuclear phagocyte | 4 studies | 28% ± 5% | |
dendritic cell | 4 studies | 22% ± 7% | |
alveolar macrophage | 4 studies | 28% ± 8% | |
tissue-resident macrophage | 3 studies | 35% ± 13% | |
type II pneumocyte | 3 studies | 22% ± 6% |
Insufficient scRNA-seq data for expression of RAB20 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 1461.38 | 359 / 359 | 100% | 78.47 | 286 / 286 |
intestine | 99% | 1181.03 | 955 / 966 | 99% | 93.39 | 524 / 527 |
lung | 99% | 2205.16 | 575 / 578 | 98% | 60.13 | 1135 / 1155 |
prostate | 98% | 861.04 | 241 / 245 | 99% | 51.99 | 497 / 502 |
thymus | 100% | 1624.97 | 653 / 653 | 97% | 72.75 | 587 / 605 |
ovary | 100% | 1324.04 | 180 / 180 | 97% | 41.07 | 417 / 430 |
bladder | 100% | 841.86 | 21 / 21 | 97% | 72.82 | 487 / 504 |
kidney | 100% | 1539.51 | 89 / 89 | 96% | 73.49 | 868 / 901 |
pancreas | 98% | 927.03 | 321 / 328 | 98% | 96.16 | 175 / 178 |
breast | 100% | 1611.80 | 459 / 459 | 96% | 53.76 | 1069 / 1118 |
liver | 100% | 1833.28 | 225 / 226 | 96% | 57.41 | 389 / 406 |
uterus | 81% | 449.86 | 137 / 170 | 92% | 52.25 | 422 / 459 |
adrenal gland | 100% | 3238.87 | 258 / 258 | 57% | 40.34 | 132 / 230 |
esophagus | 67% | 458.67 | 975 / 1445 | 77% | 31.31 | 141 / 183 |
skin | 56% | 245.54 | 1016 / 1809 | 83% | 43.12 | 390 / 472 |
brain | 26% | 123.35 | 678 / 2642 | 83% | 31.48 | 586 / 705 |
adipose | 100% | 1802.70 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 89.46 | 29 / 29 |
spleen | 100% | 2976.46 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.02 | 1 / 1 |
blood vessel | 100% | 1950.19 | 1330 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 2435.35 | 905 / 929 | 0% | 0 | 0 / 0 |
heart | 93% | 851.49 | 799 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 87% | 25.19 | 39 / 45 |
eye | 0% | 0 | 0 / 0 | 85% | 25.71 | 68 / 80 |
muscle | 25% | 118.48 | 202 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0090385 | Biological process | phagosome-lysosome fusion |
GO_0090383 | Biological process | phagosome acidification |
GO_0071346 | Biological process | cellular response to type II interferon |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0045335 | Cellular component | phagocytic vesicle |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0012505 | Cellular component | endomembrane system |
GO_0030670 | Cellular component | phagocytic vesicle membrane |
GO_0005525 | Molecular function | GTP binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | RAB20 |
Protein name | Ras-related protein Rab-20 Alternative protein RAB20 |
Synonyms | |
Description | FUNCTION: Plays a role in apical endocytosis/recycling. Plays a role in the maturation and acidification of phagosomes that engulf pathogens, such as S.aureus and M.tuberculosis. Plays a role in the fusion of phagosomes with lysosomes. . |
Accessions | ENST00000267328.5 Q9NX57 L8EAY4 |